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OBITools3
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Opened by Ginez González@ginez.gonzalez

obi import - not working

Hi there, I wonder somebody could help me with this issue.

I have installed OBITools3 in a server following the instructions here (https://git.metabarcoding.org/obitools/obitools3/wikis/Installing-the-OBITools3) and passed the test (Obi test) with 100% ;) The running version is OBITools3-3.0.lb14-1.

The following is what I have tried:

  1. obi import --quality-solexa eDNA_Miseq/fastq/Lib01_S1_R1_001.fastq eDNA_Miseq/Reads/Lib01_S1_readF
  2. variations of the previous code; without --quality solexa and changing the running directory.

I keep getting this error consistently:

Traceback (most recent call last): File "/home/bela/conda/envs/Obitools/bin/obi", line 62, in config[root_config_name]['module'].run(config) File "python/obitools3/commands/import.pyx", line 228, in obitools3.commands.import.run NotImplementedError

I have also looked at the same issue reported a year ago ("import Error"), which is closed now, but without success.

Any idea what could be wrong? Many thanks,

Ginez

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