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Closed
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Opened Jul 18, 2021 by Eric Coissac@coissacOwner

Problem in the obi stats output.

After an obi illuminapairedend I did a stat file on score and score_normed.

obi stats -c score -c score_norm peerless/paired > alignment_scores.txt

As expected, I got 4 column text file, named respectively :

  • score
  • score_norm
  • count
  • total

Every column is separated by a mix of tab and space characters, except the two last only separated by several spaces. This complicates the reading of the generated file using the readr R package (read_delim function) because of a missing tab character between the two last column. Can you add this missing tab (which is present in the header) ?

Thank you

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Reference: obitools/obitools3#111