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through the corresponding functions in utils

files with all modules (creating issues with global/static variables).
EXCEPT RUNTIME LINKING DOESN'T WORK YET

possible cases

could be switched was not accounted for

be more explicit

(low level layer in C and Cython API)

encoded sequence

not a satisfying solution)

recording for build_ref_db and ecotag

columns

different views

threshold requires that they are

in bits not bytes and using view API instead of column API

properly set to 0 if the value was NA (ignore previous commit with the
same message)

double instead of int

properly set to 0 if the value was NA

for the taxonomic assignment of sequences

metadata for the taxonomic assignment of sequences

with keeping all AVLs mapped seems the most efficient. Now 1 million
sequences more or less constantly takes 1 minute.

when adding new values, fixed a bug when calculating if an AVL data file
has reached the maximum size, fixed a casting bug, and added a boolean
so read-only AVLs files are not truncated