Weird buggy Eclipse commit with nothing changed

e18b762d · Celine Mercier · 0a0f0682 · e18b762d · e18b762d · e18b762d
Commit e18b762d authored 6 years ago by Celine Mercier
283 changed files
--- a/LICENSE
+++ b/LICENSE
--- a/MANIFEST.in
+++ b/MANIFEST.in
--- a/README.md
+++ b/README.md
--- a/c-sandbox/obicount/Makefile
+++ b/c-sandbox/obicount/Makefile
--- a/c-sandbox/obicount/obicount.c
+++ b/c-sandbox/obicount/obicount.c
--- a/distutils.ext/obidistutils/__init__.py
+++ b/distutils.ext/obidistutils/__init__.py
--- a/distutils.ext/obidistutils/command/__init__.py
+++ b/distutils.ext/obidistutils/command/__init__.py
--- a/distutils.ext/obidistutils/command/build.py
+++ b/distutils.ext/obidistutils/command/build.py
--- a/distutils.ext/obidistutils/command/build_cexe.py
+++ b/distutils.ext/obidistutils/command/build_cexe.py
--- a/distutils.ext/obidistutils/command/build_ctools.py
+++ b/distutils.ext/obidistutils/command/build_ctools.py
--- a/distutils.ext/obidistutils/command/build_exe.py
+++ b/distutils.ext/obidistutils/command/build_exe.py
--- a/distutils.ext/obidistutils/command/build_ext.py
+++ b/distutils.ext/obidistutils/command/build_ext.py
--- a/distutils.ext/obidistutils/command/build_files.py
+++ b/distutils.ext/obidistutils/command/build_files.py
--- a/distutils.ext/obidistutils/command/build_scripts.py
+++ b/distutils.ext/obidistutils/command/build_scripts.py
--- a/distutils.ext/obidistutils/command/build_sphinx.py
+++ b/distutils.ext/obidistutils/command/build_sphinx.py
--- a/distutils.ext/obidistutils/command/install.py
+++ b/distutils.ext/obidistutils/command/install.py
--- a/distutils.ext/obidistutils/command/install_scripts.py
+++ b/distutils.ext/obidistutils/command/install_scripts.py
--- a/distutils.ext/obidistutils/command/install_sphinx.py
+++ b/distutils.ext/obidistutils/command/install_sphinx.py
--- a/distutils.ext/obidistutils/command/littlebigman.py
+++ b/distutils.ext/obidistutils/command/littlebigman.py
--- a/distutils.ext/obidistutils/command/pidname.py
+++ b/distutils.ext/obidistutils/command/pidname.py
--- a/distutils.ext/obidistutils/command/sdist.py
+++ b/distutils.ext/obidistutils/command/sdist.py
--- a/distutils.ext/obidistutils/core.py
+++ b/distutils.ext/obidistutils/core.py
--- a/distutils.ext/obidistutils/dist.py
+++ b/distutils.ext/obidistutils/dist.py
--- a/distutils.ext/obidistutils/serenity/__init__.py
+++ b/distutils.ext/obidistutils/serenity/__init__.py
--- a/distutils.ext/obidistutils/serenity/bootstrappip.py
+++ b/distutils.ext/obidistutils/serenity/bootstrappip.py
--- a/distutils.ext/obidistutils/serenity/checkpackage.py
+++ b/distutils.ext/obidistutils/serenity/checkpackage.py
--- a/distutils.ext/obidistutils/serenity/checkpython.py
+++ b/distutils.ext/obidistutils/serenity/checkpython.py
--- a/distutils.ext/obidistutils/serenity/checksystem.py
+++ b/distutils.ext/obidistutils/serenity/checksystem.py
--- a/distutils.ext/obidistutils/serenity/globals.py
+++ b/distutils.ext/obidistutils/serenity/globals.py
--- a/distutils.ext/obidistutils/serenity/rerun.py
+++ b/distutils.ext/obidistutils/serenity/rerun.py
--- a/distutils.ext/obidistutils/serenity/snake.py
+++ b/distutils.ext/obidistutils/serenity/snake.py
--- a/distutils.ext/obidistutils/serenity/util.py
+++ b/distutils.ext/obidistutils/serenity/util.py
--- a/distutils.ext/obidistutils/serenity/virtual.py
+++ b/distutils.ext/obidistutils/serenity/virtual.py
--- a/distutils.ext/src/littlebigman.c
+++ b/distutils.ext/src/littlebigman.c
--- a/distutils.ext/src/pidname.c
+++ b/distutils.ext/src/pidname.c
--- a/doc/.gitignore
+++ b/doc/.gitignore
--- a/doc/Doxyfile
+++ b/doc/Doxyfile
--- a/doc/Makefile
+++ b/doc/Makefile
--- a/doc/conf.py
+++ b/doc/conf.py
--- a/doc/source/DMS.rst
+++ b/doc/source/DMS.rst
--- a/doc/source/UML/OBIDMS_UML.png
+++ b/doc/source/UML/OBIDMS_UML.png
--- a/doc/source/UML/OBITypes_UML.class.violet.html
+++ b/doc/source/UML/OBITypes_UML.class.violet.html
--- a/doc/source/UML/OBITypes_UML.png
+++ b/doc/source/UML/OBITypes_UML.png
--- a/doc/source/UML/ObiDMS_UML.class.violet.html
+++ b/doc/source/UML/ObiDMS_UML.class.violet.html
--- a/doc/source/containers.rst
+++ b/doc/source/containers.rst
--- a/doc/source/data.rst
+++ b/doc/source/data.rst
--- a/doc/source/elementary.rst
+++ b/doc/source/elementary.rst
--- a/doc/source/guidelines.rst
+++ b/doc/source/guidelines.rst
--- a/doc/source/images/history.png
+++ b/doc/source/images/history.png
--- a/doc/source/images/version_control.png
+++ b/doc/source/images/version_control.png
--- a/doc/source/index.rst
+++ b/doc/source/index.rst
--- a/doc/source/specialvalues.rst
+++ b/doc/source/specialvalues.rst
--- a/doc/source/types.rst
+++ b/doc/source/types.rst
--- a/python/obi.py
+++ b/python/obi.py
--- a/python/obitools3/__init__.py
+++ b/python/obitools3/__init__.py
--- a/python/obitools3/__init__.pyc
+++ b/python/obitools3/__init__.pyc
--- a/python/obitools3/align/__init__.py
+++ b/python/obitools3/align/__init__.py
--- a/python/obitools3/align/_assemble.pxd
+++ b/python/obitools3/align/_assemble.pxd
--- a/python/obitools3/align/_assemble.pyx
+++ b/python/obitools3/align/_assemble.pyx
--- a/python/obitools3/align/_dynamic.pxd
+++ b/python/obitools3/align/_dynamic.pxd
--- a/python/obitools3/align/_dynamic.pyx
+++ b/python/obitools3/align/_dynamic.pyx
--- a/python/obitools3/align/_nws.pxd
+++ b/python/obitools3/align/_nws.pxd
--- a/python/obitools3/align/_nws.pyx
+++ b/python/obitools3/align/_nws.pyx
--- a/python/obitools3/align/_qsassemble.pyx
+++ b/python/obitools3/align/_qsassemble.pyx
--- a/python/obitools3/align/_qsrassemble.pyx
+++ b/python/obitools3/align/_qsrassemble.pyx
--- a/python/obitools3/align/_rassemble.pxd
+++ b/python/obitools3/align/_rassemble.pxd
--- a/python/obitools3/align/_rassemble.pyx
+++ b/python/obitools3/align/_rassemble.pyx
--- a/python/obitools3/align/_solexapairend.pyx
+++ b/python/obitools3/align/_solexapairend.pyx
--- a/python/obitools3/align/solexapairend.py
+++ b/python/obitools3/align/solexapairend.py
--- a/python/obitools3/apps/__init__.py
+++ b/python/obitools3/apps/__init__.py
--- a/python/obitools3/apps/arguments.pxd
+++ b/python/obitools3/apps/arguments.pxd
--- a/python/obitools3/apps/arguments.pyx
+++ b/python/obitools3/apps/arguments.pyx
--- a/python/obitools3/apps/command.pxd
+++ b/python/obitools3/apps/command.pxd
--- a/python/obitools3/apps/command.pyx
+++ b/python/obitools3/apps/command.pyx
--- a/python/obitools3/apps/config.pxd
+++ b/python/obitools3/apps/config.pxd
--- a/python/obitools3/apps/config.pyx
+++ b/python/obitools3/apps/config.pyx
--- a/python/obitools3/apps/logging.pxd
+++ b/python/obitools3/apps/logging.pxd
--- a/python/obitools3/apps/logging.pyx
+++ b/python/obitools3/apps/logging.pyx
--- a/python/obitools3/apps/optiongroups/__init__.py
+++ b/python/obitools3/apps/optiongroups/__init__.py
--- a/python/obitools3/apps/progress.pxd
+++ b/python/obitools3/apps/progress.pxd
--- a/python/obitools3/apps/progress.pyx
+++ b/python/obitools3/apps/progress.pyx
--- a/python/obitools3/apps/temp.pxd
+++ b/python/obitools3/apps/temp.pxd
--- a/python/obitools3/apps/temp.pyx
+++ b/python/obitools3/apps/temp.pyx
--- a/python/obitools3/commands/__init__.py
+++ b/python/obitools3/commands/__init__.py
--- a/python/obitools3/commands/alignpairedend.pyx
+++ b/python/obitools3/commands/alignpairedend.pyx
--- a/python/obitools3/commands/annotate.pyx
+++ b/python/obitools3/commands/annotate.pyx
--- a/python/obitools3/commands/count.pyx
+++ b/python/obitools3/commands/count.pyx
--- a/python/obitools3/commands/ecopcr.pyx
+++ b/python/obitools3/commands/ecopcr.pyx
--- a/python/obitools3/commands/export.pyx
+++ b/python/obitools3/commands/export.pyx
--- a/python/obitools3/commands/grep.pyx
+++ b/python/obitools3/commands/grep.pyx
--- a/python/obitools3/commands/history.pyx
+++ b/python/obitools3/commands/history.pyx
--- a/python/obitools3/commands/import.pyx
+++ b/python/obitools3/commands/import.pyx
--- a/python/obitools3/commands/less.pyx
+++ b/python/obitools3/commands/less.pyx
--- a/python/obitools3/commands/ls.pyx
+++ b/python/obitools3/commands/ls.pyx
--- a/python/obitools3/commands/ngsfilter.pyx
+++ b/python/obitools3/commands/ngsfilter.pyx
--- a/python/obitools3/commands/sort.pyx
+++ b/python/obitools3/commands/sort.pyx
--- a/python/obitools3/commands/stats.pyx
+++ b/python/obitools3/commands/stats.pyx
--- a/python/obitools3/commands/test.pyx
+++ b/python/obitools3/commands/test.pyx
--- a/python/obitools3/commands/uniq.pxd
+++ b/python/obitools3/commands/uniq.pxd
--- a/python/obitools3/commands/uniq.pyx
+++ b/python/obitools3/commands/uniq.pyx
--- a/python/obitools3/dms/__init__.py
+++ b/python/obitools3/dms/__init__.py
--- a/python/obitools3/dms/capi/__init__.py
+++ b/python/obitools3/dms/capi/__init__.py
--- a/python/obitools3/dms/capi/obialign.pxd
+++ b/python/obitools3/dms/capi/obialign.pxd
--- a/python/obitools3/dms/capi/obiclean.pxd
+++ b/python/obitools3/dms/capi/obiclean.pxd
--- a/python/obitools3/dms/capi/obidms.pxd
+++ b/python/obitools3/dms/capi/obidms.pxd
--- a/python/obitools3/dms/capi/obidmscolumn.pxd
+++ b/python/obitools3/dms/capi/obidmscolumn.pxd
--- a/python/obitools3/dms/capi/obiecopcr.pxd
+++ b/python/obitools3/dms/capi/obiecopcr.pxd
--- a/python/obitools3/dms/capi/obierrno.pxd
+++ b/python/obitools3/dms/capi/obierrno.pxd
--- a/python/obitools3/dms/capi/obitaxonomy.pxd
+++ b/python/obitools3/dms/capi/obitaxonomy.pxd
--- a/python/obitools3/dms/capi/obitypes.pxd
+++ b/python/obitools3/dms/capi/obitypes.pxd
--- a/python/obitools3/dms/capi/obiutils.pxd
+++ b/python/obitools3/dms/capi/obiutils.pxd
--- a/python/obitools3/dms/capi/obiview.pxd
+++ b/python/obitools3/dms/capi/obiview.pxd
--- a/python/obitools3/dms/column/__init__.py
+++ b/python/obitools3/dms/column/__init__.py
--- a/python/obitools3/dms/column/column.pxd
+++ b/python/obitools3/dms/column/column.pxd
--- a/python/obitools3/dms/column/column.pyx
+++ b/python/obitools3/dms/column/column.pyx
--- a/python/obitools3/dms/column/column_idx.pxd
+++ b/python/obitools3/dms/column/column_idx.pxd
--- a/python/obitools3/dms/column/column_idx.pyx
+++ b/python/obitools3/dms/column/column_idx.pyx
--- a/python/obitools3/dms/column/typed_column/__init__.py
+++ b/python/obitools3/dms/column/typed_column/__init__.py
--- a/python/obitools3/dms/column/typed_column/bool.pxd
+++ b/python/obitools3/dms/column/typed_column/bool.pxd
--- a/python/obitools3/dms/column/typed_column/bool.pyx
+++ b/python/obitools3/dms/column/typed_column/bool.pyx
--- a/python/obitools3/dms/column/typed_column/char.pxd
+++ b/python/obitools3/dms/column/typed_column/char.pxd
--- a/python/obitools3/dms/column/typed_column/char.pyx
+++ b/python/obitools3/dms/column/typed_column/char.pyx
--- a/python/obitools3/dms/column/typed_column/float.pxd
+++ b/python/obitools3/dms/column/typed_column/float.pxd
--- a/python/obitools3/dms/column/typed_column/float.pyx
+++ b/python/obitools3/dms/column/typed_column/float.pyx
--- a/python/obitools3/dms/column/typed_column/int.pxd
+++ b/python/obitools3/dms/column/typed_column/int.pxd
--- a/python/obitools3/dms/column/typed_column/int.pyx
+++ b/python/obitools3/dms/column/typed_column/int.pyx
--- a/python/obitools3/dms/column/typed_column/qual.pxd
+++ b/python/obitools3/dms/column/typed_column/qual.pxd
--- a/python/obitools3/dms/column/typed_column/qual.pyx
+++ b/python/obitools3/dms/column/typed_column/qual.pyx
--- a/python/obitools3/dms/column/typed_column/seq.pxd
+++ b/python/obitools3/dms/column/typed_column/seq.pxd
--- a/python/obitools3/dms/column/typed_column/seq.pyx
+++ b/python/obitools3/dms/column/typed_column/seq.pyx
--- a/python/obitools3/dms/column/typed_column/str.pxd
+++ b/python/obitools3/dms/column/typed_column/str.pxd
--- a/python/obitools3/dms/column/typed_column/str.pyx
+++ b/python/obitools3/dms/column/typed_column/str.pyx
--- a/python/obitools3/dms/dms.cfiles
+++ b/python/obitools3/dms/dms.cfiles
--- a/python/obitools3/dms/dms.pxd
+++ b/python/obitools3/dms/dms.pxd
--- a/python/obitools3/dms/dms.pyx
+++ b/python/obitools3/dms/dms.pyx
--- a/python/obitools3/dms/obiseq.pxd
+++ b/python/obitools3/dms/obiseq.pxd
--- a/python/obitools3/dms/obiseq.pyx
+++ b/python/obitools3/dms/obiseq.pyx
--- a/python/obitools3/dms/object.pxd
+++ b/python/obitools3/dms/object.pxd
--- a/python/obitools3/dms/object.pyx
+++ b/python/obitools3/dms/object.pyx
--- a/python/obitools3/dms/taxo/__init__.py
+++ b/python/obitools3/dms/taxo/__init__.py
--- a/python/obitools3/dms/taxo/taxo.pxd
+++ b/python/obitools3/dms/taxo/taxo.pxd
--- a/python/obitools3/dms/taxo/taxo.pyx
+++ b/python/obitools3/dms/taxo/taxo.pyx
--- a/python/obitools3/dms/view/__init__.py
+++ b/python/obitools3/dms/view/__init__.py
--- a/python/obitools3/dms/view/typed_view/__init__.py
+++ b/python/obitools3/dms/view/typed_view/__init__.py
--- a/python/obitools3/dms/view/typed_view/view_NUC_SEQS.pxd
+++ b/python/obitools3/dms/view/typed_view/view_NUC_SEQS.pxd
--- a/python/obitools3/dms/view/typed_view/view_NUC_SEQS.pyx
+++ b/python/obitools3/dms/view/typed_view/view_NUC_SEQS.pyx
--- a/python/obitools3/dms/view/view.pxd
+++ b/python/obitools3/dms/view/view.pxd
--- a/python/obitools3/files/__init__.py
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--- a/python/obitools3/files/linebuffer.pxd
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--- a/python/obitools3/files/linebuffer.pyx
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--- a/python/obitools3/files/uncompress.pxd
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--- a/python/obitools3/files/uncompress.pyx
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--- a/python/obitools3/files/universalopener.pxd
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--- a/python/obitools3/files/universalopener.pyx
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--- a/python/obitools3/format/__init__.py
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--- a/python/obitools3/format/fasta.pxd
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--- a/python/obitools3/format/fasta.pyx
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--- a/python/obitools3/format/fastq.pxd
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--- a/python/obitools3/format/fastq.pyx
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--- a/python/obitools3/format/header.pxd
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--- a/python/obitools3/format/header.pyx
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--- a/python/obitools3/parsers/__init__.py
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--- a/python/obitools3/parsers/embl.pxd
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--- a/python/obitools3/parsers/embl_genbank_features.pxd
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--- a/python/obitools3/parsers/embl_genbank_features.pyx
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--- a/python/obitools3/parsers/fasta.pxd
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--- a/python/obitools3/parsers/fasta.pyx
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--- a/python/obitools3/parsers/fastq.pxd
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--- a/python/obitools3/parsers/fastq.pyx
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--- a/python/obitools3/parsers/header.pxd
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--- a/python/obitools3/parsers/universal.pyx
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--- a/python/obitools3/uri/__init__.py
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--- a/python/obitools3/uri/decode.pxd
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--- a/python/obitools3/utils.cfiles
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--- a/python/obitools3/utils.pxd
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--- a/python/obitools3/utils.pyx
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--- a/python/obitools3/version.py
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--- a/python/obitools3/version.pyc
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--- a/python/obitools3/writers/__init__.py
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--- a/python/obitools3/writers/fasta.pxd
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--- a/python/obitools3/writers/fasta.pyx
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--- a/python/obitools3/writers/fastq.pyx
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--- a/requirements.txt
+++ b/requirements.txt
--- a/setup.py
+++ b/setup.py
--- a/src/_sse.h
+++ b/src/_sse.h
--- a/src/array_indexer.c
+++ b/src/array_indexer.c
--- a/src/array_indexer.h
+++ b/src/array_indexer.h
--- a/src/char_str_indexer.c
+++ b/src/char_str_indexer.c
--- a/src/char_str_indexer.h
+++ b/src/char_str_indexer.h
--- a/src/crc64.c
+++ b/src/crc64.c
--- a/src/crc64.h
+++ b/src/crc64.h
--- a/src/dna_seq_indexer.c
+++ b/src/dna_seq_indexer.c
--- a/src/dna_seq_indexer.h
+++ b/src/dna_seq_indexer.h
--- a/src/encode.c
+++ b/src/encode.c
--- a/src/encode.h
+++ b/src/encode.h
--- a/src/hashtable.c
+++ b/src/hashtable.c
--- a/src/hashtable.h
+++ b/src/hashtable.h
--- a/src/libecoPCR/ecoError.c
+++ b/src/libecoPCR/ecoError.c
--- a/src/libecoPCR/ecoMalloc.c
+++ b/src/libecoPCR/ecoMalloc.c
--- a/src/libecoPCR/ecoPCR.h
+++ b/src/libecoPCR/ecoPCR.h
--- a/src/libecoPCR/ecoapat.c
+++ b/src/libecoPCR/ecoapat.c
--- a/src/libecoPCR/ecodna.c
+++ b/src/libecoPCR/ecodna.c
--- a/src/libecoPCR/libapat/CODES/dft_code.h
+++ b/src/libecoPCR/libapat/CODES/dft_code.h
--- a/src/libecoPCR/libapat/CODES/dna_code.h
+++ b/src/libecoPCR/libapat/CODES/dna_code.h
--- a/src/libecoPCR/libapat/CODES/prot_code.h
+++ b/src/libecoPCR/libapat/CODES/prot_code.h
--- a/src/libecoPCR/libapat/Gmach.h
+++ b/src/libecoPCR/libapat/Gmach.h
--- a/src/libecoPCR/libapat/Gtypes.h
+++ b/src/libecoPCR/libapat/Gtypes.h
--- a/src/libecoPCR/libapat/apat.h
+++ b/src/libecoPCR/libapat/apat.h
--- a/src/libecoPCR/libapat/apat_parse.c
+++ b/src/libecoPCR/libapat/apat_parse.c
--- a/src/libecoPCR/libapat/apat_search.c
+++ b/src/libecoPCR/libapat/apat_search.c
--- a/src/libecoPCR/libapat/libstki.c
+++ b/src/libecoPCR/libapat/libstki.c
--- a/src/libecoPCR/libapat/libstki.h
+++ b/src/libecoPCR/libapat/libstki.h
--- a/src/libecoPCR/libthermo/nnparams.c
+++ b/src/libecoPCR/libthermo/nnparams.c
--- a/src/libecoPCR/libthermo/nnparams.h
+++ b/src/libecoPCR/libthermo/nnparams.h
--- a/src/libjson/cJSON.c
+++ b/src/libjson/cJSON.c
--- a/src/libjson/cJSON.h
+++ b/src/libjson/cJSON.h
--- a/src/libjson/json_utils.c
+++ b/src/libjson/json_utils.c
--- a/src/libjson/json_utils.h
+++ b/src/libjson/json_utils.h
--- a/src/linked_list.c
+++ b/src/linked_list.c
--- a/src/linked_list.h
+++ b/src/linked_list.h
--- a/src/obi_align.c
+++ b/src/obi_align.c
--- a/src/obi_align.h
+++ b/src/obi_align.h
--- a/src/obi_clean.h
+++ b/src/obi_clean.h
--- a/src/obi_ecopcr.c
+++ b/src/obi_ecopcr.c
--- a/src/obi_ecopcr.h
+++ b/src/obi_ecopcr.h
--- a/src/obiavl.c
+++ b/src/obiavl.c
--- a/src/obiavl.h
+++ b/src/obiavl.h
--- a/src/obiblob.c
+++ b/src/obiblob.c
--- a/src/obiblob.h
+++ b/src/obiblob.h
--- a/src/obiblob_indexer.c
+++ b/src/obiblob_indexer.c
--- a/src/obiblob_indexer.h
+++ b/src/obiblob_indexer.h
--- a/src/obidebug.h
+++ b/src/obidebug.h
--- a/src/obidms.c
+++ b/src/obidms.c
--- a/src/obidms.h
+++ b/src/obidms.h
--- a/src/obidms_taxonomy.c
+++ b/src/obidms_taxonomy.c
--- a/src/obidms_taxonomy.h
+++ b/src/obidms_taxonomy.h
--- a/src/obidmscolumn.c
+++ b/src/obidmscolumn.c
--- a/src/obidmscolumn.h
+++ b/src/obidmscolumn.h
--- a/src/obidmscolumn_array.c
+++ b/src/obidmscolumn_array.c
--- a/src/obidmscolumn_array.h
+++ b/src/obidmscolumn_array.h
--- a/src/obidmscolumn_blob.c
+++ b/src/obidmscolumn_blob.c
--- a/src/obidmscolumn_blob.h
+++ b/src/obidmscolumn_blob.h
--- a/src/obidmscolumn_bool.c
+++ b/src/obidmscolumn_bool.c
--- a/src/obidmscolumn_bool.h
+++ b/src/obidmscolumn_bool.h
--- a/src/obidmscolumn_char.c
+++ b/src/obidmscolumn_char.c
--- a/src/obidmscolumn_char.h
+++ b/src/obidmscolumn_char.h
--- a/src/obidmscolumn_float.c
+++ b/src/obidmscolumn_float.c
--- a/src/obidmscolumn_float.h
+++ b/src/obidmscolumn_float.h
--- a/src/obidmscolumn_idx.c
+++ b/src/obidmscolumn_idx.c
--- a/src/obidmscolumn_idx.h
+++ b/src/obidmscolumn_idx.h
--- a/src/obidmscolumn_int.c
+++ b/src/obidmscolumn_int.c
--- a/src/obidmscolumn_int.h
+++ b/src/obidmscolumn_int.h
--- a/src/obidmscolumn_qual.c
+++ b/src/obidmscolumn_qual.c
--- a/src/obidmscolumn_qual.h
+++ b/src/obidmscolumn_qual.h
--- a/src/obidmscolumn_seq.c
+++ b/src/obidmscolumn_seq.c
--- a/src/obidmscolumn_seq.h
+++ b/src/obidmscolumn_seq.h
--- a/src/obidmscolumn_str.c
+++ b/src/obidmscolumn_str.c
--- a/src/obidmscolumn_str.h
+++ b/src/obidmscolumn_str.h
--- a/src/obidmscolumndir.c
+++ b/src/obidmscolumndir.c
--- a/src/obidmscolumndir.h
+++ b/src/obidmscolumndir.h
--- a/src/obierrno.c
+++ b/src/obierrno.c
--- a/src/obierrno.h
+++ b/src/obierrno.h
--- a/src/obilittlebigman.c
+++ b/src/obilittlebigman.c
--- a/src/obilittlebigman.h
+++ b/src/obilittlebigman.h
--- a/src/obitypes.c
+++ b/src/obitypes.c
--- a/src/obitypes.h
+++ b/src/obitypes.h
--- a/src/obiview.c
+++ b/src/obiview.c
--- a/src/obiview.h
+++ b/src/obiview.h
--- a/src/sse_banded_LCS_alignment.c
+++ b/src/sse_banded_LCS_alignment.c
--- a/src/sse_banded_LCS_alignment.h
+++ b/src/sse_banded_LCS_alignment.h
--- a/src/uint8_indexer.c
+++ b/src/uint8_indexer.c
--- a/src/uint8_indexer.h
+++ b/src/uint8_indexer.h
--- a/src/upperband.c
+++ b/src/upperband.c
--- a/src/upperband.h
+++ b/src/upperband.h
--- a/src/utils.c
+++ b/src/utils.c
--- a/src/utils.h
+++ b/src/utils.h