OBITools problem with obiclean
I've been following the OBITools (1.01) wolves diet tutorial for my dataset on vampire bats and successfully reached this step:
obiclean -s merged_sample -r 0.05 -H \ wolf.ali.assigned.uniq.c10.l80.fasta > wolf.ali.assigned.uniq.c10.l80.clean.fasta
Replacing with my file: obiclean -s merged_sample -r 0.05 -H \ bats.cat.ali.assigned.uniq.c2.L150.l30.fasta > bats.clean.fasta
The bats.clean.fasta file is created but remained empty, even after running this command for 5 days!! I changed the value (0.05) many times; from 0.02 to 1
Did you face a similar problem before? My file: bats.cat.ali.assigned.uniq.c2.L150.l30.fasta looks highly similar to the wolves' tutorial one.