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  • #59

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Opened Nov 27, 2020 by peter_ssss@seeber.pa

obistat -s seq_length -v seq_length not working

Hi, maximum/mean/minimum of a regular fasta file work fine, but I don't get to stddev/var. Below is the output. thanks!

obistat -s seq_length test.fasta test.fasta 76.8 % |######################################\ ] remain : 00:00:00 sd_seq_length count total Traceback (most recent call last): File "/software/packages-15.1/obitools/1.2.13/bin/obistat", line 217, in print (("%%%df" % lsigma[m]) % sigma[m][c])+"\t", KeyError: 'seq_length'

obistat -v seq_length test.fasta test.fasta 76.8 % |######################################\ ] remain : 00:00:00 var_seq_length count total Traceback (most recent call last): File "/software/packages-15.1/obitools/1.2.13/bin/obistat", line 215, in print (("%%%df" % lvarp[m]) % varp[m][c])+"\t", KeyError: 'seq_length'

Edited Nov 27, 2020 by peter_ssss
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Reference: obitools/obitools#59