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  • #46

Closed
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Opened Aug 28, 2019 by Christina P@cpavloud

ngsfilter: AssertionError

Hello,

I am trying to use ngsfilter and I get this error

Traceback (most recent call last): File "/mnt/big/Metagenomics/OBITools-1.2.0/bin/ngsfilter", line 426, in <module> primers=readTagfile(options.taglist) File "/mnt/big/Metagenomics/OBITools-1.2.0/bin/ngsfilter", line 249, in readTagfile "partial fragment are not usable with primer pair : (%s,%s)" % (forward,reverse) AssertionError: partial fragment are not usable with primer pair : (D: nnnncgctcttatggtgcatggccgttcttagt,R: nnnnatacagcgcatctaagggcatcacagacc)

I am using OBITools-1.2.0/ and a command that I have previously used with a different set of samples and a different sample description file

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Reference: obitools/obitools#46