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  • #4

Closed
Open
Opened Aug 05, 2015 by Celine Mercier@mercierOwner

"Cannot reallocate strict primer count table"

Someone is getting this error on a Debian 7 machine:

./ecoPrimers -d ../mito/mito -O 18 -e 3 -l 10 -L 250 -c -r 6231
Reading taxonomy database ...Ok
Reading sequence database ...
# Reading file ../mito/mito_001.sdx containing 1736 sequences...
Ok
Sequence read : 29
Database is constituted of    29 examples        corresponding to    29 species
                       and     0 counterexamples corresponding to     0 species
Total distinct species count 29

Indexing words in sequences
  Filtered sequences    29/   29           29          
ok
 Considered word of size 13 for filtering : 12
  Primers should be at least present in 20/29 example sequences
Error 2 in file strictprimers.c line 246 : Cannot reallocate strict primer count table
Aborted

(I can't replicate this error)

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Reference: obitools/ecoprimers#4