.. Organelle Assembler documentation master file, created by
   sphinx-quickstart on Thu Feb 13 16:10:03 2014.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

Welcome to Organelle Assembler's documentation!
===============================================

Contents:

.. toctree::
   :maxdepth: 2
   
   Algorithms <algorithms>
   Assembling a mitochondrion genome <mitochondrion>
   User API <userapi>
   The organelle assembler indexer <orgasmi>


Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`

