Commits · f77346baeecd5135f65a862963018f142c6817bb · ORG.Asm / ORG.Asm

20 Aug, 2015 1 commit
- Path bug in the coll of getseeds · f77346ba
  Eric Coissac committed Aug 20, 2015
  
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18 Aug, 2015 4 commits
- push the first beta version 0.1 · 0b34ddf5
  Eric Coissac committed Aug 18, 2015
  
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- Adds some files corresponding the result of the assembling presented in · 57288340
```
the basic tutorial
```
  Eric Coissac committed Aug 18, 2015
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- Small bugs · a40e9f9b
  Eric Coissac committed Aug 18, 2015
  
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- Continuing the first release of the documentation. · 7d969494
  Eric Coissac committed Aug 18, 2015
  
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17 Aug, 2015 3 commits
- Patch a bug in the length variance estimation when variance is null · dbf4a082
  Eric Coissac committed Aug 17, 2015
  
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- Add a new command seeds recomputing the set of seed reads. This command · 8e312e93
```
is mainly usefull because the seed file format has changed, this command
allows to recreate a seed file corresponding to the new format
```
  Eric Coissac committed Aug 17, 2015
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- patch a small bug in the installer · 9decca37
  Eric Coissac committed Aug 17, 2015
  
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16 Aug, 2015 1 commit
- First version of get-orgasm.py working correctly · da7c0a0e
  Eric Coissac committed Aug 16, 2015
  
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15 Aug, 2015 1 commit
- Force the run of the littlebigman command before every command · d73af4c3
  Eric Coissac committed Aug 15, 2015
  
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14 Aug, 2015 8 commits
- Patch an import · f2fccc31
  Eric Coissac committed Aug 15, 2015
  
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- Merge branch 'orgasm-python3' into 'master' · 42c0f1ef
```
Orgasm python3

The Python3 version becomes the new master version

See merge request !1
```
  Eric Coissac committed Aug 15, 2015
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- patch of the distutil extension for working with pip install · e98adb8d
  Eric Coissac committed Aug 15, 2015
  
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- patch the manifest for including the sphinx exentions · f1e4f7ac
  Eric Coissac committed Aug 14, 2015
  
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- Patch few bug related to the new version of cython + intallation · 02d33a54
```
problems
```
  Eric Coissac committed Aug 14, 2015
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- Small fixes · bb49bc25
  Eric Coissac committed Aug 14, 2015
  
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- refactoring of the doc sources · 0321904a
  Eric Coissac committed Aug 14, 2015
  
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- Patch a bug in the detection of running in a virtualenv · dbedeb9f
  Eric Coissac committed Aug 14, 2015
  
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07 Aug, 2015 2 commits

Merge branch 'orgasm-python3' of · 296f7ab6

git@git.metabarcoding.org:org-asm/org-asm.git into orgasm-python3

Conflicts:
	doc/sphinx/source/algorithms.rst
	doc/sphinx/source/commands/buildgraph.rst
	doc/sphinx/source/commands/index.rst
	doc/sphinx/source/index.rst

committed Aug 07, 2015

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continue documentation · a5fc5964
Eric Coissac committed Aug 07, 2015

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03 Aug, 2015 1 commit
- continue documentation · dd4aea99
  Eric Coissac committed Aug 03, 2015
  
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31 Jul, 2015 2 commits
- increase logged information · 8a6849e8
  Eric Coissac committed Jul 31, 2015
  
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- Change the behaviour of the --seeds option. · 8a69d340
```
It is now possible to specify several probe sets.
If a probe set is specified the bbbblast is run again otherwise the
previous matches are restored
```
  Eric Coissac committed Jul 31, 2015
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30 Jul, 2015 1 commit
- Start the doc · d09447a7
  Eric Coissac committed Jul 30, 2015
  
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28 Jul, 2015 5 commits
- cleanning to remove a warning · a65e1d5e
  Eric Coissac committed Jul 28, 2015
  
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- Add a toy sample dataset · 29ee3323
  Eric Coissac committed Jul 28, 2015
  
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- Add the sdist command · 1b928c17
  Eric Coissac committed Jul 28, 2015
  
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- patch bug in the fastq formating of the index command and several small · 8cedba3c
```
other stuffs
```
  Eric Coissac committed Jul 28, 2015
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- Swith the tango function to cython in the assembler submodule · 7042f912
  Eric Coissac committed Jul 28, 2015
  
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27 Jul, 2015 1 commit
- Switch to python 3 · 8d076d3e
  Eric Coissac committed Jul 27, 2015
  
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01 Jul, 2015 1 commit
- Patch fewbugs compare to the obitools3 version · 683691d9
  Eric Coissac committed Jul 01, 2015
  
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23 Apr, 2015 1 commit
- Patch a bug in the progress bar · aa3f94c4
  Eric Coissac committed Apr 23, 2015
  
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22 Apr, 2015 1 commit
- Patch a bug in the progress bar · b37df655
  Eric Coissac committed Apr 22, 2015
  
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21 Apr, 2015 1 commit
- Patch a bug in the progress bar · 3dfb48ba
  Eric Coissac committed Apr 21, 2015
  
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12 Apr, 2015 1 commit
- --no commit message · 41854044
  Eric Coissac committed Apr 12, 2015
  
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19 Mar, 2015 1 commit
- --no commit message · dde17b8a
  Eric Coissac committed Mar 19, 2015
  
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25 Feb, 2015 4 commits
- Add 3' adaptors · 52c68b9f
  Eric Coissac committed Feb 25, 2015
  
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- Add 3' adaptors · fcfa3a7f
  Eric Coissac committed Feb 25, 2015
  
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- Add 3' adaptors · c1690a38
  Eric Coissac committed Feb 25, 2015
  
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- Add 3' adaptors · 42234a51
  Eric Coissac committed Feb 25, 2015
  
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