Commits · f6c75e8a114c0de488b76da6089c302ff9e9019a · ORG.Asm / ORG.Asm

11 Dec, 2018 1 commit
- patch the obidistutils extention to rely on setuptools. · f6c75e8a
  Eric Coissac committed Dec 11, 2018
  
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03 Dec, 2018 1 commit
- Switch to version 1.0.00 · fd976f7d
  Eric Coissac committed Dec 03, 2018
  
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02 Dec, 2018 7 commits
- Add gitignore files · feae63d0
  Eric Coissac committed Dec 02, 2018
  
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- Add ignore to the differente version of the orgasm binaries · e8ed6ad4
  Eric Coissac committed Dec 02, 2018
  
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- Some updates into the documentation · 5a6549d2
  Eric Coissac committed Dec 02, 2018
  
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- Remove version specification to the package requirement to gest the · 428af603
```
latest version
```
  Eric Coissac committed Dec 02, 2018
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- Add an extra space between #include and <stdio.h> · 2a5430d8
  Eric Coissac committed Dec 02, 2018
  
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- Remove a dependency to be compatible with the new sphinx version · 1296c51c
  Eric Coissac committed Dec 02, 2018
  
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- Change the way to call PIP. We are now using system calls rather than · 2c1d3639
```
the pre-PIP10 internal API to conform with PIP developer
recommendations.
```
  Eric Coissac committed Dec 02, 2018
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04 Feb, 2018 1 commit
- Patch a bug concerning the length selection during indexing. · bafdf166
```
Switch to version 1.0.alpha11
```
  Eric Coissac committed Feb 04, 2018
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31 Jan, 2017 2 commits
- Patch a bug occurring when both coverage and minread are set from the · 9848864d
```
command line options
```
  Eric Coissac committed Jan 31, 2017
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- Patch a bug relative to tags that can be added to the fasta header · bb69c466
  Eric Coissac committed Jan 31, 2017
  
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27 Jan, 2017 5 commits
- Patch some bugs and switch to version alpha9 · b6f5096c
  Eric Coissac committed Jan 27, 2017
  
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- Adds to illumina adapter · b1e6c937
  Eric Coissac committed Jan 27, 2017
  
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- Switch to version 1.0.00-alpha7 · d2c0a0ae
  Eric Coissac committed Jan 27, 2017
  
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- Adds the `restore` command to rescue an assembly by restoring the · eafb9e38
```
intermediate assembly as the main one.
```
  Eric Coissac committed Jan 27, 2017
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- Adds possibility to remove edges based on the count of matches with · 17e6a496
```
seeds
```
  Eric Coissac committed Jan 27, 2017
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26 Jan, 2017 4 commits
- attempt to solve the memory bug · 76a2b9c9
  Eric Coissac committed Jan 26, 2017
  
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- Refactoring & debugging · a13e9bdd
  Eric Coissac committed Jan 26, 2017
  
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- Adds options to control minread estimate · b330de3e
  Eric Coissac committed Jan 26, 2017
  
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- Switch to version 1.0.00-alpha5 · 359c026f
  Eric Coissac committed Jan 26, 2017
  
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24 Jan, 2017 1 commit

Refactoring of the unfold command · 2202ed0f

- Create a new submodule for output format
- Remove the *path* and *fasta* commands integrated into unfold

committed Jan 24, 2017

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20 Jan, 2017 1 commit

Patches two bugs related to circular contigs · d086f56c

- Patch a bug leading to delete a base at the end of circular contigs
- Patch a bug leading to give different ids to reverse-complement
circular contigs

committed Jan 20, 2017

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04 Jan, 2017 2 commits
- Switch to version 1.0.00-alpha4 · 1d92aa97
  Eric Coissac committed Jan 04, 2017
  
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- Some cleaning and forgotten commits · 02a54795
  Eric Coissac committed Jan 04, 2017
  
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15 Dec, 2016 2 commits
- Switch to version 1.0.00-alpha3 · 381bd23b
  Eric Coissac committed Dec 15, 2016
  
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- Patch bug in circular unfolding · 079e4381
  Eric Coissac committed Dec 15, 2016
  
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25 Nov, 2016 7 commits
- Switch to version 1.0.alpha2 · ffd6006e
  Eric Coissac committed Nov 25, 2016
  
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- remove debug code · f15236f0
  Eric Coissac committed Nov 25, 2016
  
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- Fix a bug in oneXcoverage · e48ad513
  Eric Coissac committed Nov 25, 2016
  
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- Beginning of the sam output function · 188bb558
  Eric Coissac committed Nov 25, 2016
  
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- Switch to the version 1.0.alpha · f967e002
  Eric Coissac committed Nov 25, 2016
  
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- Adds an isFake function · a89b89a0
  Eric Coissac committed Nov 25, 2016
  
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- Comment the sam output option · 5dd9fa97
  Eric Coissac committed Nov 25, 2016
  
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11 Nov, 2016 4 commits
- Preparation for the path2sam function · c92d2785
  Eric Coissac committed Nov 11, 2016
  
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- Suppress some eclipse warning · a40e6d39
  Eric Coissac committed Nov 11, 2016
  
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- Adds the --force-scaffold to the unfold, unfoldrdna and path subcommand · 8a6c8b59
  Eric Coissac committed Nov 11, 2016
  
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- Management of the overlap between scaffolded contigs · 058ae863
  Eric Coissac committed Nov 11, 2016
  
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10 Nov, 2016 2 commits
- New version of the path2fasta function · f959bf85
  Eric Coissac committed Nov 10, 2016
  
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- Fix a color bug for gaps in GML output · 41e7ce4e
  Eric Coissac committed Nov 10, 2016
  
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