Commits · f15236f0342e29762eec32060edc5399a90a8dd3 · ORG.Asm / ORG.Asm · GitLab

25 Nov, 2016 6 commits
- remove debug code · f15236f0
  Eric Coissac committed Nov 25, 2016
  
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- Fix a bug in oneXcoverage · e48ad513
  Eric Coissac committed Nov 25, 2016
  
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- Beginning of the sam output function · 188bb558
  Eric Coissac committed Nov 25, 2016
  
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- Switch to the version 1.0.alpha · f967e002
  Eric Coissac committed Nov 25, 2016
  
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- Adds an isFake function · a89b89a0
  Eric Coissac committed Nov 25, 2016
  
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- Comment the sam output option · 5dd9fa97
  Eric Coissac committed Nov 25, 2016
  
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11 Nov, 2016 4 commits
- Preparation for the path2sam function · c92d2785
  Eric Coissac committed Nov 11, 2016
  
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- Suppress some eclipse warning · a40e6d39
  Eric Coissac committed Nov 11, 2016
  
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- Adds the --force-scaffold to the unfold, unfoldrdna and path subcommand · 8a6c8b59
  Eric Coissac committed Nov 11, 2016
  
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- Management of the overlap between scaffolded contigs · 058ae863
  Eric Coissac committed Nov 11, 2016
  
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10 Nov, 2016 3 commits
- New version of the path2fasta function · f959bf85
  Eric Coissac committed Nov 10, 2016
  
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- Fix a color bug for gaps in GML output · 41e7ce4e
  Eric Coissac committed Nov 10, 2016
  
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- Just re-add a filter quality for really bad reads · 679a0ec4
  Eric Coissac committed Nov 10, 2016
  
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09 Nov, 2016 12 commits
- change the default setting to remove qualtity filtering by default · 95f07892
  Eric Coissac committed Nov 09, 2016
  
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- Adds a low memory option · 3c6f8f33
  Eric Coissac committed Nov 09, 2016
  
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- Add a missing colon · 5640db43
  Eric Coissac committed Nov 09, 2016
  
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- Add a log on the read count processed · 7097ef3b
  Eric Coissac committed Nov 09, 2016
  
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- Some default parameter optimizations · 9e406944
  Eric Coissac committed Nov 09, 2016
  
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- Adds some log explaining the filtering and fixing some bugs · e9c2de37
  Eric Coissac committed Nov 09, 2016
  
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- The good one ;-) · 4264243a
  Eric Coissac committed Nov 09, 2016
  
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- Removes an extra import · f55b1788
  Eric Coissac committed Nov 09, 2016
  
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- With the missing function definition · c3bb1bc2
  Eric Coissac committed Nov 09, 2016
  
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- First version of the new index command · 7e50ffc1
  Eric Coissac committed Nov 09, 2016
  
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- Add some cython optimisation flags · f8eac3bb
  Eric Coissac committed Nov 09, 2016
  
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- Add files and reads modules to deal with index checking more efficiently · 85ea5de9
  Eric Coissac committed Nov 09, 2016
  
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07 Nov, 2016 9 commits
- Add a progress bar during automata construction · 6fa7d4cd
  Eric Coissac committed Nov 07, 2016
  
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- Remove warnings · 8af6c6a7
  Eric Coissac committed Nov 07, 2016
  
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- ??? · 8c71a358
  Eric Coissac committed Nov 07, 2016
  
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- remove some warnings · ebcaba4f
  Eric Coissac committed Nov 07, 2016
  
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- import phiX174 · a323fb6a
  Eric Coissac committed Nov 07, 2016
  
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- Remove a warning in the python editor · 1dbf873a
  Eric Coissac committed Nov 07, 2016
  
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- Store phiX174 as another probe · b0c91cfa
  Eric Coissac committed Nov 07, 2016
  
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- Add config for the looking fo Phi X174 · 126a9ac0
  Eric Coissac committed Nov 07, 2016
  
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- Add the phi x174 sequence in sample · bdd4c17e
  Eric Coissac committed Nov 07, 2016
  
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05 Nov, 2016 6 commits
- Fix #45 · 0758865d
  Eric Coissac committed Nov 05, 2016
  
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- Fix #35 · 3ccff024
  Eric Coissac committed Nov 05, 2016
  
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- Fix the bug related to FIFO writing on macosx · 30ffb475
  Eric Coissac committed Nov 05, 2016
  
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- Change the rule to determine is probe sequences are proteins · 30b6f5a2
  Eric Coissac committed Nov 05, 2016
  
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- Supress the intermediate progression logging if the log is done on a tty · 5ab4154d
  Eric Coissac committed Nov 05, 2016
  
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- Add the logger to the call to scaffold · be2c5ba6
  Eric Coissac committed Nov 05, 2016
  
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