Commits · e3d334b5d0eee01f81049110d21849a91b292c64 · ORG.Asm / ORG.Asm · GitLab

03 Nov, 2015 1 commit
- switch to version 0.1.2: a bug fix release · e3d334b5
  Eric Coissac committed Nov 03, 2015
  
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02 Nov, 2015 1 commit
- Fix a bug relative to the switch between python 2 and 3 · 7032a3d9
  Eric Coissac committed Nov 02, 2015
  
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14 Sep, 2015 3 commits
- Last fixes for new version 0.1.1b1 · 25820077
  Eric Coissac committed Sep 14, 2015
  
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- Fixes #12 · b9f21456
  Eric Coissac committed Sep 14, 2015
  
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- Fixes #11 · 04e099fc
  Eric Coissac committed Sep 14, 2015
  
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10 Sep, 2015 1 commit
- Fix a bug in the fasta command · cab8be0c
  Eric Coissac committed Sep 10, 2015
  
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29 Aug, 2015 1 commit
- Fixes #6 , by clarifying the help of the --seeds option · a5ba8e6f
  Eric Coissac committed Aug 29, 2015
  
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28 Aug, 2015 3 commits
- Merge branch 'master' of git@git.metabarcoding.org:org-asm/org-asm.git · 750a6bd4
```
Conflicts:
	python/orgasm/command/index.py
```
  Eric Coissac committed Aug 28, 2015
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- Delay the logging of the broken pipe error · 665498e8
  Eric Coissac committed Aug 28, 2015
  
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- Delay the logging of the broken pipe error · 9af53b7b
  Eric Coissac committed Aug 28, 2015
  
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27 Aug, 2015 2 commits
- Fixes the #9 by expliciting the documentation of the --fasta · 549cc5c6
```
--forward-fasta and --reverse-fasta options
```
  Eric Coissac committed Aug 27, 2015
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- Catch the brokenPipeError generated when orgasmi stop after reaching the · 3f898bb9
```
maximum indexable read count.
```
  Eric Coissac committed Aug 27, 2015
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26 Aug, 2015 1 commit

Fixes by checking the signal stack in the progress bar function. The · 9014afff

idea to check the signal at that place is that most of the step
involving long computation time call regularly this function to update
the progress bar

committed Aug 26, 2015

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25 Aug, 2015 1 commit
- Fixes #5 by printing the help message when oa is run without arguments · 470d8707
```
Signed-off-by: Eric Coissac <eric.coissac@metabarcoding.org>
```
  Eric Coissac committed Aug 25, 2015
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24 Aug, 2015 3 commits
- Merge branch 'master' of git@git.metabarcoding.org:org-asm/org-asm.git · b896d252
  Eric Coissac committed Aug 24, 2015
  
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- Fix issue #8 by substituing all occurrences of Bruinj by Bruijn in · 1d3d4616
```
source code and documentation
```
  Eric Coissac committed Aug 24, 2015
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- Fix issue #4 by adding a --version option to the oa command · e0b1955b
  Eric Coissac committed Aug 24, 2015
  
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21 Aug, 2015 4 commits
- Tag the new version 0.1.0b3 · 3b0d5f95
  Eric Coissac committed Aug 21, 2015
  
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- Merge branch 'master' of git@git.metabarcoding.org:org-asm/org-asm.git · 28461246
```
Conflicts:
	python/orgasm/command/path.py
```
  Eric Coissac committed Aug 21, 2015
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- Patch the index to be able to deal with sequence entries only · 8278b2bc
```
constituted by N
```
  Eric Coissac committed Aug 21, 2015
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- remove old url · 5eaa2b32
  Eric Coissac committed Aug 21, 2015
  
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20 Aug, 2015 2 commits
- Path bug in the coll of getseeds · f77346ba
  Eric Coissac committed Aug 20, 2015
  
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- Path bug in the coll of getseeds · 40c859a5
  Eric Coissac committed Aug 20, 2015
  
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18 Aug, 2015 4 commits
- push the first beta version 0.1 · 0b34ddf5
  Eric Coissac committed Aug 18, 2015
  
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- Adds some files corresponding the result of the assembling presented in · 57288340
```
the basic tutorial
```
  Eric Coissac committed Aug 18, 2015
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- Small bugs · a40e9f9b
  Eric Coissac committed Aug 18, 2015
  
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- Continuing the first release of the documentation. · 7d969494
  Eric Coissac committed Aug 18, 2015
  
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17 Aug, 2015 3 commits
- Patch a bug in the length variance estimation when variance is null · dbf4a082
  Eric Coissac committed Aug 17, 2015
  
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- Add a new command seeds recomputing the set of seed reads. This command · 8e312e93
```
is mainly usefull because the seed file format has changed, this command
allows to recreate a seed file corresponding to the new format
```
  Eric Coissac committed Aug 17, 2015
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- patch a small bug in the installer · 9decca37
  Eric Coissac committed Aug 17, 2015
  
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16 Aug, 2015 1 commit
- First version of get-orgasm.py working correctly · da7c0a0e
  Eric Coissac committed Aug 16, 2015
  
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15 Aug, 2015 1 commit
- Force the run of the littlebigman command before every command · d73af4c3
  Eric Coissac committed Aug 15, 2015
  
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14 Aug, 2015 8 commits
- Patch an import · f2fccc31
  Eric Coissac committed Aug 15, 2015
  
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- Merge branch 'orgasm-python3' into 'master' · 42c0f1ef
```
Orgasm python3

The Python3 version becomes the new master version

See merge request !1
```
  Eric Coissac committed Aug 15, 2015
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- patch of the distutil extension for working with pip install · e98adb8d
  Eric Coissac committed Aug 15, 2015
  
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- patch the manifest for including the sphinx exentions · f1e4f7ac
  Eric Coissac committed Aug 14, 2015
  
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- Patch few bug related to the new version of cython + intallation · 02d33a54
```
problems
```
  Eric Coissac committed Aug 14, 2015
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- Small fixes · bb49bc25
  Eric Coissac committed Aug 14, 2015
  
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- refactoring of the doc sources · 0321904a
  Eric Coissac committed Aug 14, 2015
  
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- Patch a bug in the detection of running in a virtualenv · dbedeb9f
  Eric Coissac committed Aug 14, 2015
  
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