Commits · bdd4c17e62c59572a68aa47abbb11617078d2e66 · ORG.Asm / ORG.Asm · GitLab

07 Nov, 2016 1 commit
- Add the phi x174 sequence in sample · bdd4c17e
  Eric Coissac committed Nov 07, 2016
  
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05 Nov, 2016 9 commits
- Fix #45 · 0758865d
  Eric Coissac committed Nov 05, 2016
  
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- Fix #35 · 3ccff024
  Eric Coissac committed Nov 05, 2016
  
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- Fix the bug related to FIFO writing on macosx · 30ffb475
  Eric Coissac committed Nov 05, 2016
  
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- Change the rule to determine is probe sequences are proteins · 30b6f5a2
  Eric Coissac committed Nov 05, 2016
  
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- Supress the intermediate progression logging if the log is done on a tty · 5ab4154d
  Eric Coissac committed Nov 05, 2016
  
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- Add the logger to the call to scaffold · be2c5ba6
  Eric Coissac committed Nov 05, 2016
  
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- Add a new assembler property to the compact assembly objects · 6c213599
  Eric Coissac committed Nov 05, 2016
  
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- Change unfold command according to the new unfold algorithm · 80be8f89
  Eric Coissac committed Nov 05, 2016
  
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- Star implementation of the new unfold function · 9b9eef59
  Eric Coissac committed Nov 05, 2016
  
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04 Nov, 2016 16 commits
- Remove fasta output redirection to a file · 48666605
  Eric Coissac committed Nov 04, 2016
  
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- Adds the logger to the scaffold call · 3ce945b3
  Eric Coissac committed Nov 04, 2016
  
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- Adds the logger to the scaffold call · 86341e86
  Eric Coissac committed Nov 04, 2016
  
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- Removes non useful imports · 219a4b08
  Eric Coissac committed Nov 04, 2016
  
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- Add the logger to the scaffold call · 85b7683b
  Eric Coissac committed Nov 04, 2016
  
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- Add the logger to the scaffold call · d682d89f
  Eric Coissac committed Nov 04, 2016
  
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- Add the logger to the scaffold call and modify for this the · 03cd4a59
```
`compactGraph2lastgraph` function
```
  Eric Coissac committed Nov 04, 2016
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- Add logger to the scafforld call · c80a94ef
  Eric Coissac committed Nov 04, 2016
  
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- Remove non useful import and add logger to the scaffold call · cfb160ee
  Eric Coissac committed Nov 04, 2016
  
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- Remove unuseful import · 0d8a1586
  Eric Coissac committed Nov 04, 2016
  
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- Patch logging from stderr to logger in scaffold · a4818eaf
  Eric Coissac committed Nov 04, 2016
  
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- Adds the stem id in the label of the scaffold edges · cf3897ec
  Eric Coissac committed Nov 04, 2016
  
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- Add a *class* key containing the value `scaffold:paired-end` to the · dde94122
```
edges added by the scaffold function on the base of the pair-ended links
```
  Eric Coissac committed Nov 04, 2016
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- Adds a *class* key to the compact assembly edges containing sequence · 46c64ffc
  Eric Coissac committed Nov 04, 2016
  
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- Change the cdhit command · d68dcb4c
  Eric Coissac committed Nov 04, 2016
  
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- Add data about plant barcodes · bfdf5e28
  Eric Coissac committed Nov 04, 2016
  
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03 Nov, 2016 5 commits
- Patch a bug in `selectGoodComponent` because of the new compact graph · bb765723
```
structure
```
  Eric Coissac committed Nov 03, 2016
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- Fix a bug in fillgap created by the change of API · f61e648a
  Eric Coissac committed Nov 03, 2016
  
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- Add a default length of 10 if estimated gap length is below zero · 53852200
  Eric Coissac committed Nov 03, 2016
  
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- Fix a bug on the gap length estimate · 221ccc08
  Eric Coissac committed Nov 03, 2016
  
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- Finalize the interface with the user · ec2c66d4
  Eric Coissac committed Nov 03, 2016
  
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02 Nov, 2016 5 commits
- remove warning in the code · bf597793
  Eric Coissac committed Nov 02, 2016
  
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- complete the ignore file · bcd5e3f1
  Eric Coissac committed Nov 02, 2016
  
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- complete the graph compaction algorithm to provide more info · 1d469ab5
  Eric Coissac committed Nov 02, 2016
  
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- new version of the workflow for the doc · bd816dc2
  Eric Coissac committed Nov 02, 2016
  
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- Add a new *graph* command to dump a graph file representing the · c4bacebe
```
assembling
```
  Eric Coissac committed Nov 02, 2016
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29 Sep, 2016 1 commit
- Change the variance formula to the variance estimator formula · 72601757
  Eric Coissac committed Sep 29, 2016
  
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27 Sep, 2016 1 commit
- Remove some error message related to cython syntax · 9e789f40
  Eric Coissac committed Sep 27, 2016
  
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06 Sep, 2016 2 commits
- switch to version 0.2.07 · 82b57e30
  Eric Coissac committed Sep 06, 2016
  
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- Supress interactive log during thindexing if the stderr is redirectied · 0aa7d0c8
```
to a file
```
  Eric Coissac committed Sep 06, 2016
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