Commits · 21a8c9ed2964a81cb76c0f8f9c8e48d6deba6905 · ORG.Asm / ORG.Asm

23 Jan, 2016 2 commits
- Switch to version 0.1.7 a bug release version · 21a8c9ed
  Eric Coissac committed Jan 23, 2016
  
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- Patch a bug into the coll of get-pip.py from the bootstraping function · 6efb070e
  Eric Coissac committed Jan 23, 2016
  
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22 Jan, 2016 5 commits
- Merge branch 'master' of git@git.metabarcoding.org:org-asm/org-asm.git · 6b35fad6
  Eric Coissac committed Jan 22, 2016
  
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- Switch to version 0.1.6 - Add the gep length estimation and patch · 380b00c2
```
install for ubuntu
```
  Eric Coissac committed Jan 22, 2016
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- Add license · b955d726
  Eric Coissac committed Jan 22, 2016
  
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- Use the newly created bootstrap function for installing pip · 3ae92377
  Eric Coissac committed Jan 22, 2016
  
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- Add a bootstrap function for installing pip · f4862403
  Eric Coissac committed Jan 22, 2016
  
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21 Jan, 2016 4 commits
- switch to version 1.4 · c8d43ccc
  Eric Coissac committed Jan 21, 2016
  
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- Patch a bug in the gap length estimation · b0006c21
  Eric Coissac committed Jan 21, 2016
  
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- Enforce the check of the pip version at the pip import using the · 0c0cf629
```
ensurepip module available since python 3.4
```
  Eric Coissac committed Jan 21, 2016
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- Change requirements to PIP>=8.0 · f146b76a
  Eric Coissac committed Jan 21, 2016
  
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15 Jan, 2016 2 commits
- Add gap length estimation · c568ba6d
  Eric Coissac committed Jan 15, 2016
  
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- set minlink as an option in the config · c89e0cdf
  Eric Coissac committed Jan 15, 2016
  
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04 Dec, 2015 1 commit
- Convertion tools (unfold, unfoldrdna, path) write now a new file · 810dfaaa
```
containing the generated path. 

	- a path per line
	- a space between each edge name
```
  Eric Coissac committed Dec 04, 2015
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07 Nov, 2015 2 commits
- Switch to version 0.1.3 · 2237903b
  Eric Coissac committed Nov 07, 2015
  
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- Patch the evaluation of the coverage from seed matches. · c3beb1a2
```
Adds a --identity option to the buildgraph command
```
  Eric Coissac committed Nov 07, 2015
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03 Nov, 2015 2 commits
- Patch two small bug in the installer of the versio 0.1.2 · 2f5fe190
  Eric Coissac committed Nov 03, 2015
  
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- switch to version 0.1.2: a bug fix release · e3d334b5
  Eric Coissac committed Nov 03, 2015
  
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02 Nov, 2015 1 commit
- Fix a bug relative to the switch between python 2 and 3 · 7032a3d9
  Eric Coissac committed Nov 02, 2015
  
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14 Sep, 2015 3 commits
- Last fixes for new version 0.1.1b1 · 25820077
  Eric Coissac committed Sep 14, 2015
  
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- Fixes #12 · b9f21456
  Eric Coissac committed Sep 14, 2015
  
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- Fixes #11 · 04e099fc
  Eric Coissac committed Sep 14, 2015
  
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10 Sep, 2015 1 commit
- Fix a bug in the fasta command · cab8be0c
  Eric Coissac committed Sep 10, 2015
  
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29 Aug, 2015 1 commit
- Fixes #6 , by clarifying the help of the --seeds option · a5ba8e6f
  Eric Coissac committed Aug 29, 2015
  
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28 Aug, 2015 3 commits
- Merge branch 'master' of git@git.metabarcoding.org:org-asm/org-asm.git · 750a6bd4
```
Conflicts:
	python/orgasm/command/index.py
```
  Eric Coissac committed Aug 28, 2015
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- Delay the logging of the broken pipe error · 665498e8
  Eric Coissac committed Aug 28, 2015
  
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- Delay the logging of the broken pipe error · 9af53b7b
  Eric Coissac committed Aug 28, 2015
  
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27 Aug, 2015 2 commits
- Fixes the #9 by expliciting the documentation of the --fasta · 549cc5c6
```
--forward-fasta and --reverse-fasta options
```
  Eric Coissac committed Aug 27, 2015
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- Catch the brokenPipeError generated when orgasmi stop after reaching the · 3f898bb9
```
maximum indexable read count.
```
  Eric Coissac committed Aug 27, 2015
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26 Aug, 2015 1 commit

Fixes by checking the signal stack in the progress bar function. The · 9014afff

idea to check the signal at that place is that most of the step
involving long computation time call regularly this function to update
the progress bar

committed Aug 26, 2015

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25 Aug, 2015 1 commit
- Fixes #5 by printing the help message when oa is run without arguments · 470d8707
```
Signed-off-by: Eric Coissac <eric.coissac@metabarcoding.org>
```
  Eric Coissac committed Aug 25, 2015
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24 Aug, 2015 3 commits
- Merge branch 'master' of git@git.metabarcoding.org:org-asm/org-asm.git · b896d252
  Eric Coissac committed Aug 24, 2015
  
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- Fix issue #8 by substituing all occurrences of Bruinj by Bruijn in · 1d3d4616
```
source code and documentation
```
  Eric Coissac committed Aug 24, 2015
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- Fix issue #4 by adding a --version option to the oa command · e0b1955b
  Eric Coissac committed Aug 24, 2015
  
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21 Aug, 2015 4 commits
- Tag the new version 0.1.0b3 · 3b0d5f95
  Eric Coissac committed Aug 21, 2015
  
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- Merge branch 'master' of git@git.metabarcoding.org:org-asm/org-asm.git · 28461246
```
Conflicts:
	python/orgasm/command/path.py
```
  Eric Coissac committed Aug 21, 2015
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- Patch the index to be able to deal with sequence entries only · 8278b2bc
```
constituted by N
```
  Eric Coissac committed Aug 21, 2015
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- remove old url · 5eaa2b32
  Eric Coissac committed Aug 21, 2015
  
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20 Aug, 2015 2 commits
- Path bug in the coll of getseeds · f77346ba
  Eric Coissac committed Aug 20, 2015
  
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- Path bug in the coll of getseeds · 40c859a5
  Eric Coissac committed Aug 20, 2015
  
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