Commit d682d89f by Eric Coissac

Add the logger to the scaffold call

parent 03cd4a59
......@@ -59,7 +59,12 @@ def run(config):
genesincontig(cg,r,x)
scaffold(asm,cg,minlink=5,back=int(back),addConnectedLink=False)
scaffold(asm,
cg,
minlink=5,
back=int(back),
addConnectedLink=False,
logger=logger)
ccs = list(cg.connectedComponentIterator())
gcc = selectGoodComponent(cg)
......
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