Commit bfdf5e28 by Eric Coissac

Add data about plant barcodes

parent bb765723
>matk-XF
TAATTTACGATCAATTCATTC--
>matK-MALP-RC
ATACTTCGACTTTCTTGT------
cd-hit -i matk.clean.fst -o matk.clust.fst -c 0.95 -G 1 -b 100 -n 2 -s 0.9 -g 1 -p 1
\ No newline at end of file
This source diff could not be displayed because it is too large. You can view the blob instead.
This source diff could not be displayed because it is too large. You can view the blob instead.
>NC_000927@NeolCp084@rbcl@97438@98865@R@1@476 ribulose-1,5-bisphosphate_carboxylase/oxygenase_large_subunit
MAPQTETQAKAGFKAGVKDYRLTYYTPDYQVKDTDILAAFRMTPQPGVPPEECGAAVAAE
SSTGTWTTVWTDGLTSLDRYKGRCYDLEPVAGEDNQYIAYVAYPLDLFEEGSVTNLFTSI
VGNVFGFKALRALRLEDLRISVAYCKTFQGAPHGIQVERDKLNKYGRGLLGCTIKPKLGL
SAKNYGRAVYECLRGGLDFT
>NC_008408@BinaPp46@rbcl@49858@51285@D@1@476 ribulose-1,5-bisphosphate_carboxylase/oxygenase_large_subunit
MIFAKKTEAAGFKAGVKDYRLTYYTPDYKVKDTDILAAFRVTPQPGVPPEEAAAAVAAES
STGTWTTVWTDGLTSLDRYKGRCYFIETFEGQKDNQFICYIAYPLDLFEEGSVTNLFTSI
VGNVFGFKALRAIRLEDLRIPVAYVKTFEGPPHGIQVERDKLNKYGRALLGCTIKPKLGL
SAKNYGRAVYEGLRGGLDFT
>NC_009766@CureCp032@rbcl@50773@52269@R@1@499 ribulose-1,5-bisphosphate_carboxylase/oxygenase_large_subunit
MSPQTETKASVGFKAGVKDYKLTYYTPDYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE
SSTGTWTTVWTDGLTSLDRYKGRCYRIERVIGEKDQYIAYVAYPLDLFEEGSVTNLFTSI
VGNVFGFKALRALRLEDLRIPPAYTKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL
SAKNYGRAVYECLRGGLDFT
>NC_011713@FearC_p028@rbcl@54780@56243@D@1@488 ribulose-1,5-bisphosphate_carboxylase/oxygenase_large_subunit
MSPQTETKASVGFQDGVKDYKLTYYNPEYETKDTDILAAFRVTPQPGVPPEEAGAVVAAE
SSTGTWTTVWTDGLTSLDRYKGRCYHIEPVAGEDNQWICYVAYPLDLFEEGSVTNMFTSI
VGNVFGFKALRALRLEDLRIPVAYSKTFQGPPHGIQVERDKLNKYGRPLWGCTIKPKLGL
SAKNYGRACYECLRGGLDFT
>NC_012099@PypaC_p043@rbcl@26096@27523@R@1@476 ribulose-1,5-bisphosphate_carboxylase/oxygenase_large_subunit
MSPQTETKTGTGFKAGVKDYRLTYYTPDYQVKETDILAAFRMTPQPGVPPEEAGAAVAAE
SSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDEQYICYIAYPIDLFEEGSVTNLFTSI
VGNVFGFKALRALRLEDLRISPAYCKTFLGPPHGIQVERDRLNKYGRPLLGCTIKPKLGL
SAKNYGRAVYECLRGGLDFT
>NC_017754@EUGYP_p04@rbcl@2861@4288@D@1@476 RUBISCO,_large_subunit
MSPQTETKTGAGFKAGVKDYRLTYYTPEYQIAETDILAAFRMTPQPGVPAEECGAAVAAE
SSTGTWTTVWTDGLTSLDRYKGRCYDLEPVPGEDNQYICYVAYPIDLFEEGSVTNLLTSI
VGNVFGFKALRALRLEDLRISSAYVKTFAGPPHGIQVERDRLNKYGRAMLGCTIKPKLGL
SAKNYGRAVYECLRGGLDFT
>NC_000925@PopuCp041@rbcl@29451@30917@D@1@489 ribulose-1,5-bisphosphate_carboxylase/oxygenase_large_subunit
MSQSVESRTRIKSERYESGVIPYAKMGYWDADYVIKETDILALFRITPQPGVDPIEASAA
IAGESSTATWTVVWTDLLTACDLYRAKAYRVDPVPNVADQYFAYIAYDIDLFEEGSIANL
TASIIGNVFGFKAVKALRLEDMRMPVAYLKTFQGPATGLIVERERMDKFGRPFLGATVKP
KLGLSGKNYGRVVYEGLKGGLDFL
>NC_000926@GuthCp046@rbcl@46294@47760@D@1@489 ribulose-1,5-bisphosphate_carboxylase/oxygenase_large_subunit
MSQSVESRTRIKNERYESGVIPYAKMGYWDADYVIKDTDVLAMFRMTPQKGVDPVECAAA
IAGESSTATWTVVWTDLLTACDLYRAKAYRVDPVPGATDQYFAYIAYELDLFEEGSLANL
TASIIGNVFGFKAVNALRLEDMRLPIAYLKTFQGPATGVIVERERLDKYGRPLLGATVKP
KLGLSGKNYGRVVYEGLKGGLDFL
>NC_001713@OdsiCp075@rbcl@67323@68795@R@1@491 ribulose-1,5-bisphosphate_carboxylase/oxygenase_large_subunit
MSQSVSERTRIKSDRYESGVIPYAKMGYWDASYTVQDTDVLALFRITPQPGVDPVEAAAA
VAGESSTATWTVVWTDLLTACERYRAKAYRVDPVPNTTDQYFAFIAYECDLFEEGSLANL
TASIIGNVFGFKAVAALRLEDMRIPYAYLKTFQGPATGIVVERERLNKYGAPLLGATVKP
KLGLSGKNYGRVVYEGLKGGLDFL
>NC_001840@CycaCp117@rbcl@103032@104498@D@1@489 ribulose-1,5-bisphosphate_carboxylase/oxygenase_large_subunit
MAQSVQERTRLKNKRYESGVIPYAKMGYWDPNYVVKDTDILALFRVTPQPGVDPIEASAA
VAGESSTATWTVIWCDLLTACDVYRAKAYRVDQVPNSPDQYFAYIAYDLDLFEEGSIANL
TASIIGNVFGFKALAALRLEDMRIPIGYLKTFQGPATGVVVERERLNMFGKPFLGATVKP
KLGLSSKNYGRVVYEGLKGGLNFL
>NC_004799@CymeCp013@rbcl@7504@8970@D@1@489 ribulose-1,5-bisphosphate_carboxylase/oxygenase_large_subunit
MAQSVQERTRLKNKRYESGVIPYAKMGYWNPNYVVKDSDMLALFRVTPQPGVDPIEAAAA
VAGESSTATWTVVWTDLLTACDVYRAKAYRVDPVPTAPDQYFVYIAYDIDLFEEGSIANL
TASIIGNVFGFKAVKALRLEDMRIPFSYLKTFQGPATGVIVERERLNKFGRPLLGCTVKP
KLGLSGKNYGRVVYEGLKGGLDFL
>NC_007288@EmhuCp005@rbcl@11420@12886@D@1@489 ribulose-1,5-bisphosphate_carboxylase/oxygenase_large_subunit
MSQAVESRTRIKSERYESGVIPYAKMGYWDPEYVIKDTDILALFRCTPQPGVDPVEAAAA
LAGESSTATWTVVWTDLLTACDLYRAKAFRVDPVPSAADTYFCYIAYDIDLFEEGSLANL
TASIIGNIFGFKAVKALRLEDMRFPVALLKTYQGPATGVVVERERMDKFGRPLLGATVKP
KLGLSGKNYGRVVFEGLKGGLDFL
>NC_010772@Heak293_Cp007@rbcl@13195@14661@D@1@489 ribulose-1,5-bisphosphate_carboxylase/oxygenase_large_subunit
MSNNVYERNRIKNDRYESGVIPYAKMGYWDANYSVKDTDLLALFRLTPQPGVDPVEAAAA
VAGESSTATWTVVWTDLLTACDVYRAKAYRVDPVPSAADQYFAYIAYECDLFEEGSLANM
TASIIGNVFGFKAVAALRLEDMRIPYAYLKTFQGPATGIIVERERLDTFGRPLLGATVKP
KLGLSGKNYGRVVYEGLRGGLDFL
>NC_012898@AuanCp071@rbcl@60100@61566@D@1@489 ribulose-1,5-bisphosphate_carboxylase/oxygenase_large_subunit
MSQSVSERTRIKSERYESGVIPYAKMGYWDASYQVKATDLLALFRITPQPGVDPVEAAAA
VAGESSTATWTVVWTDLLTACDVYRAKAFRVDPVPSAPDQFFAYIAYEGDLFEEGSLANM
TASIIGNVFGFKAVKALRLEDMRIPHSYLKTFQGPATGVVVERERMDKFGRPLLGATVKP
KLGLSGKNYGRVVFEGLKGGLDFL
>NC_018523@LJCPDNA_044@rbcl@49350@50816@D@1@489 ribulose-1,5-bisphosphate_carboxylase/oxygenase_large_subunit
MPENVQERTRLKSERYESGVIPYAKMGYWDADYNVKDTDILALFRITPQPGVDPVEAAAA
VAGESSTATWTVVWTDLLTACDIYRAKAYRVDPVPGTSDQYFAYIAYECDLFEEGSLANL
TASIIGNVFGFKAVKALRLEDMRIPFAYLKTFQGPATGIVVERERLDKFGRPFLGATVKP
KLGLSGKNYGRVVYEGLTGGLDFL
>NC_020014@Naga_1Chloroplast16@rbcl@70258@71721@R@1@488 ribulose-1,5-bisphosphate_carboxylase/oxygenase_large_subunit
MFQSVEERTRIKNERYESGVIPYAEMGYWDANYTIKDTDVLALFRITPQPGVDPIEAAAA
IAGESSTATWTVVWTDLLTACDVYRAKAYKVDSVPGTSDQFFGYVAYECDLFEEGSIANL
TASIIGNVFGFKAVKALRLEDMRMPYAYLKTFQGPATGVIVERERLDKFGRPLLGATVKP
KLGLSGKNYGRVVYEGLKGGLDFL
>NC_020371@H907_p091@rbcl@14716@16182@D@1@489 ribulose-1,5-bisphosphate_carboxylase/oxygenase_large_subunit
MSQNVESRTRIKNERYESGVIPYAKMGYWDPDYAIKETDVLAMFRLTPQPGVDPVECAAA
VAGESSTATWTVVWTDLLTACDLYRAKAFRVDPVPNSSDQYFAYIAYDIDLFEEGSLANL
TASIIGNVFGFKALKALRLEDMRIPYAYLKTFQGPATGVIVERERMDKFGRPLLGATVKP
KLGLSGKNYGRVVYEGLKGGLDFL
>NC_021618@M829_p102@rbcl@1@1467@D@1@489 ribulose-1,5-bisphosphate_carboxylase/oxygenase_large_subunit
MSQSVEERTRIKNERYESGVIPYAKMGYWDPDYVIKDTDVLALFRVTPQPGVDPVEASAA
VAGESSTATWTVVWTDLLTACDLYRAKAYKVDAVPNSSEQYFAYIAYDIDLFEEGSIANL
TASIIGNVFGFKAVKALRLEDMRIPVAYLKTFQGPATGVVVERERMDKFGRPFLGATVKP
KLGLSGKNYGRVVYEGLKGGLDFL
>NC_011600@ValiC_p091@rbcl@74549@76015@R@1@489 ribulose-1,5-bisphosphate_carboxylase/oxygenase_large_subunit
MSKSVQERTRIKSQRYESGVIPYAKMGYWDAFYNVKHTDVLALFRITPQPGVDPVEAAAA
VAGESSTATWTVVWTDLLTACDIYRAKAYRVDPVPGTTDQYFAYISYQIELFEEGSLANL
TASIIGNVFGFKAVKALRLEDMRIPFAYLKTFQGPATGLVVERERMDKFGRPLLGATVKP
KLGLSGKNYGRVVYEGLRGGLDFL
>NC_011152@CLPGMS-5039@rbcl@43574@45006@R@1@477 ribulose-1,5-bisphosphate_carboxylase/oxygenase_large_subunit
MSPKTETKASVGFKAGVKDYRLTYYTPEYQTKDTDILAAFRVTPQPGVPAEEAGAAVAAE
SSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEENQFIAYVAYPLDLFEEGSVTNLFTSI
VGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGL
SAKNYGRAVYECLRGGLDFT
>NC_021372@PhlaCp029@rbcl@57113@58555@D@1@481 ribulose-1,5-bisphosphate_carboxylase/oxygenase_large_subunit
MSPQTETKAFVGFKAGVKDYKLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAE
SSTGTWTSVWTDGLTSLDRYKGRCYHIEPVLGEENQYIAYVAYPLDLFEEGSVTNYVYFL
LWVTYLVSKPYVLLRLEDLRIPVAYTKTFQGPPHGIQVERDKLNKYGRPFLGCTIKPKLG
LSAKNYGRACYECLRGGLDFT
>NC_001675@CypaCp103@rbcl@91347@92774@R@1@476 ribulose-1,5-bisphosphate_carboxylase/oxygenase_large_subunit
MSSQARTQTRAGFKAGVKDYRLTYYTPEYTPKETDILAAFRMTPQPGVPPEECAAAVAAE
SSTGTWTTVWTDGLTSLDRYKGRSYGFEPVPGEENQYICYVAYPLDLFEEGSVTNMLTSI
VGNVFGFKALRALRLEDLRIPVGYSKTFQGPPHGITVERDKLNKYGRALLGCTIKPKLGL
SAKNYGRAVYECLRGGLDFT
>NC_013086@SemoP_p024@rbcl@51186@52613@D@1@476 ribulose-1,5-bisphosphate_carboxylase/oxygenase_large_subunit
TSPQTETKASVGSKAGVKDHRLTHYTPDYQTKDTDIPAASRMTPQPGVPAEEAGAAVAAE
SSTGTWTTVWTDGLTNLDRYKGRCYDIEPVPGEKDQYIAYAAHPSDLSEEGSVTNMSTSI
VGNVFGSKALRAPRSEDLRIPPAYSKTSKGPPHGIQVERDKSNKYGRPSLGCTIKPKLGL
SAKNYGRAVHERLRGGLDFT
>D_D_rbcla-R-RC no comment
>rbcla-F
ATGTCACCACAAACAGAGACTAAAGC-
>rbcla-R-RC
CGYGGTGGACTTGATTTTAC-------
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment