Commit 830313ac by Eric Coissac

Tag version 1.0.3

parent 9cd4c328
1.0.1
\ No newline at end of file
1.0.3
\ No newline at end of file
......@@ -472,14 +472,14 @@ cdef class StemIterator:
if circle:
minabs = min(abs(i) for i in cc)
print(minabs,file=sys.stderr)
# print(minabs,file=sys.stderr)
if minabs in cc:
first = minabs
print("in",file=sys.stderr)
# print("in",file=sys.stderr)
else:
# first = sons(graph,-minabs).pop()
first = -minabs
print("out",file=sys.stderr)
# print("out",file=sys.stderr)
nn = first
path=[first]
lsequence=[]
......
......@@ -193,7 +193,7 @@ cpdef AsmbGraph tango(Assembler self,
if progress and (icycle % 50)==0 and sys.stderr.isatty():
print("%s : %d bp [%4.1f%% fake reads; Stack size: %8d / %6.2f %d Gene: %s " % (wheel[(icycle//10) % 4],
len(graph)/2,
int(len(graph)//2),
float(fake)/(len(graph)+1)*200.,
len(seeds),
growing,
......@@ -205,11 +205,11 @@ cpdef AsmbGraph tango(Assembler self,
lgraph = graph.nodeCount()
if logger is not None and lgraph!=lastprint and lgraph % 20000==0:
lastprint=lgraph
logger.info("%d bp [%4.1f%% fake reads; Stack size: %8d / %6.2f %d Gene: %s " % (lgraph//2,
logger.info("%d bp [%4.1f%% fake reads; Stack size: %8d / %6.2f %d Gene: %s " % (int(lgraph//2),
float(fake)/(lgraph+1)*200.,
PyList_GET_SIZE(seeds),
int(PyList_GET_SIZE(seeds)),
growing,
delta,
int(delta),
lastgene))
......
......@@ -199,7 +199,6 @@ def run(config):
logger=config['orgasm']['logger']
output = getOutput(config)
if not pathlib.Path(output+'.gml').is_file():
logger.error("No assembly graph available")
sys.exit(1)
......
major = 1
minor = '0'
serial= '1'
serial= '3'
version = "%d.%s.%s" % (major,minor,serial)
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