Commit 700f5f2d by Eric Coissac

Documentation marathon

parent 7536e811
......@@ -18,17 +18,17 @@ The ORGanelle ASseMbler commands
The :ref:`organelle assembler <oa>`'s provides a set of commands.
Several of these commands (at least three) have to executed to complete
an assembling process.
- The bold green path indicates the minimal succession of
commands you need to run to assemble a sequence from a set of illumina reads.
- The green dotted path indicates an alternative succession of commands
commonly run to achieve the assembling process.
- The fine blue dotted arrows indicate the data used by each of the commands.
- The fine red dotted arrows indicate the final results provided by commands.
- The orange boxed commands correspond to utility commands not required for the
assembling but sometime useful to get or restore some information.
Several of these commands (at least three) have to executed to complete
an assembling process.
- The bold green path indicates the minimal succession of
commands you need to run to assemble a sequence from a set of illumina reads.
- The green dotted path indicates an alternative succession of commands
commonly run to achieve the assembling process.
- The fine blue dotted arrows indicate the data used by each of the commands.
- The fine red dotted arrows indicate the final results provided by commands.
- The orange boxed commands correspond to utility commands not required for the
assembling but sometime useful to get or restore some information.
The set of sub-commands can be splitted in several categories corresponding to
......
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