Commit 5b83e7d4 by Frédéric Boyer

Fasta command v1

parent 50ec92a3
......@@ -2,3 +2,32 @@
The :program:`fasta` command
The :ref:`organelle assembler <oa>`'s :program:`fasta` is a simple utility command that outputs
all the stems of the compacted assembly graph as a collection of sequences in fasta format.
command prototype
.. program:: oa fasta
.. code-block:: none
usage: oa fasta [-h]
index [<output>]
.. include:: ../options/positional.txt
optional arguments
General option
.. option:: -h, --help
show the help message and exit
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