Commit 4e9cae0f authored by Eric Coissac's avatar Eric Coissac

Change the help of the index argument

parent b6ef8e97
......@@ -32,7 +32,7 @@ default_config = { 'minread' : None,
def addOptions(parser):
parser.add_argument(dest='orgasm:indexfilename', metavar='index',
help='index root filename (produced by the orgasmi command)')
help='index root filename (produced by the oa index command)')
parser.add_argument(dest='orgasm:outputfilename', metavar='output',
nargs='?',
......
......@@ -22,7 +22,7 @@ default_config = { 'seeds' : None
def addOptions(parser):
parser.add_argument(dest='orgasm:indexfilename', metavar='index',
help='index root filename (produced by the orgasmi command)')
help='index root filename (produced by the oa index command)')
parser.add_argument(dest='orgasm:outputfilename', metavar='output',
nargs='?',
......
......@@ -15,7 +15,7 @@ default_config = { 'coverage' : None,
def addOptions(parser):
parser.add_argument(dest='orgasm:indexfilename', metavar='index',
help='index root filename (produced by the orgasmi command)')
help='index root filename (produced by the oa index command)')
parser.add_argument(dest='orgasm:outputfilename', metavar='output',
nargs='?',
......
......@@ -15,7 +15,7 @@ default_config = {
def addOptions(parser):
parser.add_argument(dest='orgasm:indexfilename', metavar='<index>',
help='index root filename (produced by the orgasmi command)')
help='index root filename (produced by the oa index command)')
parser.add_argument(dest='orgasm:outputfilename', metavar='<output>',
nargs='?',
......
......@@ -22,7 +22,7 @@ default_config = { 'seeds' : None
def addOptions(parser):
parser.add_argument(dest='orgasm:indexfilename', metavar='index',
help='index root filename (produced by the orgasmi command)')
help='index root filename (produced by the oa index command)')
parser.add_argument(dest='orgasm:outputfilename', metavar='output',
nargs='?',
......
......@@ -14,7 +14,7 @@ default_config = {
def addOptions(parser):
parser.add_argument(dest='orgasm:indexfilename', metavar='index',
help='index root filename (produced by the orgasmi command)')
help='index root filename (produced by the oa index command)')
parser.add_argument(dest='orgasm:outputfilename', metavar='<output>',
nargs='?',
......
......@@ -12,7 +12,7 @@ default_config = {
def addOptions(parser):
parser.add_argument(dest='orgasm:indexfilename', metavar='index',
help='index root filename (produced by the orgasmi command)')
help='index root filename (produced by the oa index command)')
......
......@@ -14,7 +14,7 @@ default_config = {
def addOptions(parser):
parser.add_argument(dest='orgasm:indexfilename', metavar='<index>',
help='index root filename (produced by the orgasmi command)')
help='index root filename (produced by the oa index command)')
parser.add_argument(dest='orgasm:outputfilename', metavar='<output>',
nargs='?',
......
......@@ -23,7 +23,7 @@ default_config = {
def addOptions(parser):
parser.add_argument(dest='orgasm:indexfilename', metavar='index',
help='index root filename (produced by the orgasmi command)')
help='index root filename (produced by the oa index command)')
parser.add_argument(dest='orgasm:outputfilename', metavar='output',
nargs='?',
......
......@@ -15,7 +15,7 @@ default_config = { 'circular' : False,
def addOptions(parser):
parser.add_argument(dest='orgasm:indexfilename', metavar='index',
help='index root filename (produced by the orgasmi command)')
help='index root filename (produced by the oa index command)')
parser.add_argument(dest='orgasm:outputfilename', metavar='output',
nargs='?',
......@@ -38,7 +38,7 @@ def addOptions(parser):
action='store',
default=None,
help='the number of bases taken at the end of '
'contigs to jump with pared-ends [default: <estimated>]')
'contigs to jump with paired-ends [default: <estimated>]')
......
......@@ -14,7 +14,7 @@ default_config = {
def addOptions(parser):
parser.add_argument(dest='orgasm:indexfilename', metavar='index',
help='index root filename (produced by the orgasmi command)')
help='index root filename (produced by the oa index command)')
parser.add_argument(dest='orgasm:outputfilename', metavar='output',
nargs='?',
......
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