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ORG.Asm
ORG.Asm
Commits
42c0f1ef
Commit
42c0f1ef
authored
Aug 15, 2015
by
Eric Coissac
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Merge branch 'orgasm-python3' into 'master'
Orgasm python3 The Python3 version becomes the new master version See merge request
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MANIFEST.in
MANIFEST.in
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get_orgasm/getorgasm/pip/_vendor/requests/packages/urllib3/util/__init__.py
+0
-0
connection.py
get_orgasm/getorgasm/pip/_vendor/requests/packages/urllib3/util/connection.py
+0
-0
request.py
get_orgasm/getorgasm/pip/_vendor/requests/packages/urllib3/util/request.py
+0
-0
response.py
get_orgasm/getorgasm/pip/_vendor/requests/packages/urllib3/util/response.py
+0
-0
ssl_.py
get_orgasm/getorgasm/pip/_vendor/requests/packages/urllib3/util/ssl_.py
+0
-0
timeout.py
get_orgasm/getorgasm/pip/_vendor/requests/packages/urllib3/util/timeout.py
+0
-0
url.py
get_orgasm/getorgasm/pip/_vendor/requests/packages/urllib3/util/url.py
+0
-0
sessions.py
get_orgasm/getorgasm/pip/_vendor/requests/sessions.py
+0
-0
status_codes.py
get_orgasm/getorgasm/pip/_vendor/requests/status_codes.py
+0
-0
structures.py
get_orgasm/getorgasm/pip/_vendor/requests/structures.py
+0
-0
utils.py
get_orgasm/getorgasm/pip/_vendor/requests/utils.py
+0
-0
six.py
get_orgasm/getorgasm/pip/_vendor/six.py
+0
-0
__init__.py
get_orgasm/getorgasm/pip/backwardcompat/__init__.py
+0
-0
basecommand.py
get_orgasm/getorgasm/pip/basecommand.py
+0
-0
baseparser.py
get_orgasm/getorgasm/pip/baseparser.py
+0
-0
cmdoptions.py
get_orgasm/getorgasm/pip/cmdoptions.py
+0
-0
__init__.py
get_orgasm/getorgasm/pip/commands/__init__.py
+0
-0
bundle.py
get_orgasm/getorgasm/pip/commands/bundle.py
+0
-0
completion.py
get_orgasm/getorgasm/pip/commands/completion.py
+0
-0
freeze.py
get_orgasm/getorgasm/pip/commands/freeze.py
+0
-0
help.py
get_orgasm/getorgasm/pip/commands/help.py
+0
-0
install.py
get_orgasm/getorgasm/pip/commands/install.py
+0
-0
list.py
get_orgasm/getorgasm/pip/commands/list.py
+0
-0
search.py
get_orgasm/getorgasm/pip/commands/search.py
+0
-0
show.py
get_orgasm/getorgasm/pip/commands/show.py
+0
-0
uninstall.py
get_orgasm/getorgasm/pip/commands/uninstall.py
+0
-0
unzip.py
get_orgasm/getorgasm/pip/commands/unzip.py
+0
-0
wheel.py
get_orgasm/getorgasm/pip/commands/wheel.py
+0
-0
zip.py
get_orgasm/getorgasm/pip/commands/zip.py
+0
-0
download.py
get_orgasm/getorgasm/pip/download.py
+0
-0
exceptions.py
get_orgasm/getorgasm/pip/exceptions.py
+0
-0
index.py
get_orgasm/getorgasm/pip/index.py
+0
-0
locations.py
get_orgasm/getorgasm/pip/locations.py
+0
-0
log.py
get_orgasm/getorgasm/pip/log.py
+0
-0
pep425tags.py
get_orgasm/getorgasm/pip/pep425tags.py
+0
-0
req.py
get_orgasm/getorgasm/pip/req.py
+0
-0
runner.py
get_orgasm/getorgasm/pip/runner.py
+0
-0
status_codes.py
get_orgasm/getorgasm/pip/status_codes.py
+0
-0
util.py
get_orgasm/getorgasm/pip/util.py
+0
-0
__init__.py
get_orgasm/getorgasm/pip/vcs/__init__.py
+0
-0
bazaar.py
get_orgasm/getorgasm/pip/vcs/bazaar.py
+0
-0
git.py
get_orgasm/getorgasm/pip/vcs/git.py
+0
-0
mercurial.py
get_orgasm/getorgasm/pip/vcs/mercurial.py
+0
-0
subversion.py
get_orgasm/getorgasm/pip/vcs/subversion.py
+0
-0
wheel.py
get_orgasm/getorgasm/pip/wheel.py
+0
-0
__init__.py
get_orgasm/getorgasm/svn/__init__.py
+0
-0
common.py
get_orgasm/getorgasm/svn/common.py
+0
-0
local.py
get_orgasm/getorgasm/svn/local.py
+0
-0
remote.py
get_orgasm/getorgasm/svn/remote.py
+0
-0
utility.py
get_orgasm/getorgasm/svn/utility.py
+0
-0
maurizio.py
python/maurizio.py
+0
-0
oa.py
python/oa.py
+0
-0
__init__.py
python/orgasm/__init__.py
+0
-0
__init__.py
python/orgasm/assembler/__init__.py
+0
-0
_asmbgraph.pxd
python/orgasm/assembler/_asmbgraph.pxd
+0
-0
_asmbgraph.pyx
python/orgasm/assembler/_asmbgraph.pyx
+0
-0
_assembler.pxd
python/orgasm/assembler/_assembler.pxd
+0
-0
_assembler.pyx
python/orgasm/assembler/_assembler.pyx
+0
-0
_tango.cfiles
python/orgasm/assembler/_tango.cfiles
+0
-0
_tango.pyx
python/orgasm/assembler/_tango.pyx
+0
-0
__init__.py
python/orgasm/backtranslate/__init__.py
+0
-0
_ahocorasick.pxd
python/orgasm/backtranslate/_ahocorasick.pxd
+0
-0
_ahocorasick.pyx
python/orgasm/backtranslate/_ahocorasick.pyx
+0
-0
_bitvector.pxd
python/orgasm/backtranslate/_bitvector.pxd
+0
-0
_bitvector.pyx
python/orgasm/backtranslate/_bitvector.pyx
+0
-0
fasta.py
python/orgasm/backtranslate/fasta.py
+0
-0
buildgraph.py
python/orgasm/command/buildgraph.py
+0
-0
compact.py
python/orgasm/command/compact.py
+0
-0
cutlow.py
python/orgasm/command/cutlow.py
+0
-0
fasta.py
python/orgasm/command/fasta.py
+0
-0
fillgaps.py
python/orgasm/command/fillgaps.py
+0
-0
graphstats.py
python/orgasm/command/graphstats.py
+0
-0
index.py
python/orgasm/command/index.py
+0
-0
list.py
python/orgasm/command/list.py
+0
-0
path.py
python/orgasm/command/path.py
+0
-0
unfold.py
python/orgasm/command/unfold.py
+0
-0
unfoldrdna.py
python/orgasm/command/unfoldrdna.py
+0
-0
config.py
python/orgasm/config.py
+0
-0
_fiboheap.pxd
python/orgasm/fiboheap/_fiboheap.pxd
+0
-0
_fiboheap.pyx
python/orgasm/fiboheap/_fiboheap.pyx
+0
-0
fibo.pxd
python/orgasm/fiboheap/fibo.pxd
+0
-0
__init__.py
python/orgasm/graph/__init__.py
+0
-0
_fibointheap.pxd
python/orgasm/graph/_fibointheap.pxd
+0
-0
_fibointheap.pyx
python/orgasm/graph/_fibointheap.pyx
+0
-0
_fibomaxintheap.pxd
python/orgasm/graph/_fibomaxintheap.pxd
+0
-0
_fibomaxintheap.pyx
python/orgasm/graph/_fibomaxintheap.pyx
+0
-0
_fibominintheap.pxd
python/orgasm/graph/_fibominintheap.pxd
+0
-0
_fibominintheap.pyx
python/orgasm/graph/_fibominintheap.pyx
+0
-0
_graph.cfiles
python/orgasm/graph/_graph.cfiles
+0
-0
_graph.pxd
python/orgasm/graph/_graph.pxd
+0
-0
_graph.pyx
python/orgasm/graph/_graph.pyx
+0
-0
_graphmultiedge.pxd
python/orgasm/graph/_graphmultiedge.pxd
+0
-0
_graphmultiedge.pyx
python/orgasm/graph/_graphmultiedge.pyx
+0
-0
__init__.py
python/orgasm/indexer/__init__.py
+0
-0
_orgasm.pxd
python/orgasm/indexer/_orgasm.pxd
+0
-0
_orgasm.pyx
python/orgasm/indexer/_orgasm.pyx
+0
-0
fakereads.pxd
python/orgasm/indexer/fakereads.pxd
+0
-0
fakereads.pyx
python/orgasm/indexer/fakereads.pyx
+0
-0
__init__.py
python/orgasm/multialign/__init__.py
+0
-0
_dynamic.pxd
python/orgasm/multialign/_dynamic.pxd
+0
-0
_dynamic.pyx
python/orgasm/multialign/_dynamic.pyx
+0
-0
_multi.pxd
python/orgasm/multialign/_multi.pxd
+0
-0
_multi.pyx
python/orgasm/multialign/_multi.pyx
+0
-0
__init__.py
python/orgasm/samples/__init__.py
+0
-0
tango.py
python/orgasm/tango.py
+0
-0
__init__.py
python/orgasm/utils/__init__.py
+0
-0
_progress.pxd
python/orgasm/utils/_progress.pxd
+0
-0
_progress.pyx
python/orgasm/utils/_progress.pyx
+0
-0
dna.pxd
python/orgasm/utils/dna.pxd
+0
-0
dna.pyx
python/orgasm/utils/dna.pyx
+0
-0
version.py
python/orgasm/version.py
+0
-0
sandbox.py
python/sandbox.py
+0
-0
requirements.txt
requirements.txt
+0
-0
papiCox1.fasta
samples/papiCox1.fasta
+0
-0
papi_R1.fastq.gz
samples/papi_R1.fastq.gz
+0
-0
papi_R2.fastq.gz
samples/papi_R2.fastq.gz
+0
-0
setup.py
setup.py
+0
-0
fgetln.c
src/fgetln.c
+0
-0
lookfor.c
src/lookfor.c
+0
-0
No files found.
MANIFEST.in
View file @
42c0f1ef
...
...
@@ -4,8 +4,8 @@ recursive-include python *.pyx *.pxd *.c *.h *.cfiles
recursive-include src *.c *.h
recursive-include fiboheap *.c *.h
recursive-include doc/sphinx/source *.txt *.rst *.py
recursive-include doc/sphinx/sphinxext *.py
include doc/sphinx/make.bat
include doc/sphinx/Makefile
include README.txt
include requirements.txt
distutils.ext/obidistutils/command/__init__.py
View file @
42c0f1ef
def
build_ext
(
*
args
,
**
kargs
):
'''
Wrapper over the build_ext class to postpone the import of cython
'''
from
build_ext
import
build_ext
as
_build_ext
return
_build_ext
(
*
args
,
**
kargs
)
distutils.ext/obidistutils/command/build.py
View file @
42c0f1ef
...
...
@@ -27,11 +27,16 @@ class build(ori_build):
def
has_pidname
(
self
):
return
is_mac_system
()
def
has_doc
(
self
):
return
True
sub_commands
=
[(
'littlebigman'
,
has_littlebigman
),
(
'pidname'
,
has_pidname
),
(
'build_ctools'
,
has_ctools
),
(
'build_files'
,
has_files
),
(
'build_cexe'
,
has_executables
)]
\
+
ori_build
.
sub_commands
+
ori_build
.
sub_commands
+
\
[(
'build_sphinx'
,
has_doc
)]
distutils.ext/obidistutils/command/build_cexe.py
View file @
42c0f1ef
...
...
@@ -4,9 +4,7 @@ Created on 20 oct. 2012
@author: coissac
'''
import
os
from
obidistutils.command.build_ctools
import
build_ctools
from
distutils.sysconfig
import
customize_compiler
from
distutils.errors
import
DistutilsSetupError
from
distutils
import
log
...
...
@@ -55,21 +53,21 @@ class build_cexe(build_ctools):
name of the built file (see --> build_files)
"""
sources
=
list
(
sources
)
for
i
in
x
range
(
len
(
sources
)):
print
exe_name
,
sources
[
i
],
for
i
in
range
(
len
(
sources
)):
message
=
"
%
s :->
%
s"
%
(
exe_name
,
sources
[
i
])
if
sources
[
i
][
0
]
==
'@'
:
try
:
filename
=
self
.
built_files
[
sources
[
i
][
1
:]]
except
KeyError
:
raise
DistutilsSetupError
,
\
(
'The
%
s filename declared in the source '
raise
DistutilsSetupError
(
'The
%
s filename declared in the source '
'files of the program
%
s have not been '
'built by the installation process'
)
%
(
sources
[
i
],
exe_name
)
'built by the installation process'
%
(
sources
[
i
],
exe_name
)
)
sources
[
i
]
=
filename
print
"changed to "
,
filename
log
.
info
(
"
%
s changed to
%
s"
,
message
,
filename
)
else
:
print
" ok"
log
.
info
(
"
%
s ok"
,
message
)
return
sources
distutils.ext/obidistutils/command/build_ctools.py
View file @
42c0f1ef
...
...
@@ -4,12 +4,8 @@ Created on 20 oct. 2012
@author: coissac
'''
import
os
from
obidistutils.command.build_exe
import
build_exe
from
distutils.sysconfig
import
customize_compiler
from
distutils.errors
import
DistutilsSetupError
from
distutils
import
log
class
build_ctools
(
build_exe
):
...
...
@@ -42,18 +38,21 @@ class build_ctools(build_exe):
self
.
executables
=
self
.
distribution
.
ctools
self
.
check_executable_list
(
self
.
executables
)
if
self
.
littlebigman
==
'-DLITTLE_END'
:
if
self
.
define
is
None
:
self
.
define
=
[(
'LITTLE_END'
,
None
)]
else
:
self
.
define
.
append
(
'LITTLE_END'
,
None
)
log
.
info
(
'Look for CPU architecture...
%
s'
,
self
.
define
)
self
.
ctools
=
set
()
def
run
(
self
):
build_exe
.
run
(
self
)
for
e
,
p
in
self
.
executables
:
for
e
,
p
in
self
.
executables
:
# @UnusedVariable
self
.
ctools
.
add
(
e
)
...
...
distutils.ext/obidistutils/command/build_exe.py
View file @
42c0f1ef
...
...
@@ -12,8 +12,6 @@ from distutils.errors import DistutilsSetupError
from
distutils
import
log
from
distutils.ccompiler
import
show_compilers
import
subprocess
class
build_exe
(
Command
):
description
=
"build an executable -- Abstract command "
...
...
@@ -124,30 +122,28 @@ class build_exe(Command):
just returns otherwise.
"""
if
not
isinstance
(
executables
,
list
):
raise
DistutilsSetupError
,
\
"'executables' option must be a list of tuples"
raise
DistutilsSetupError
(
"'executables' option must be a list of tuples"
)
for
exe
in
executables
:
if
not
isinstance
(
exe
,
tuple
)
and
len
(
exe
)
!=
2
:
raise
DistutilsSetupError
,
\
"each element of 'executables' must a 2-tuple"
raise
DistutilsSetupError
(
"each element of 'executables' must a 2-tuple"
)
name
,
build_info
=
exe
if
not
isinstance
(
name
,
str
):
raise
DistutilsSetupError
,
\
"first element of each tuple in 'executables' "
+
\
"must be a string (the executables name)"
raise
DistutilsSetupError
(
"first element of each tuple in 'executables' "
"must be a string (the executables name)"
)
if
'/'
in
name
or
(
os
.
sep
!=
'/'
and
os
.
sep
in
name
):
raise
DistutilsSetupError
,
\
(
"bad executable name '
%
s': "
+
"may not contain directory separators"
)
%
\
exe
[
0
]
raise
DistutilsSetupError
(
"bad executable name '
%
s': "
"may not contain directory separators"
%
exe
[
0
])
if
not
isinstance
(
build_info
,
dict
):
raise
DistutilsSetupError
,
\
"second element of each tuple in 'executables' "
+
\
"must be a dictionary (build info)"
raise
DistutilsSetupError
(
"second element of each tuple in 'executables' "
"must be a dictionary (build info)"
)
def
get_executable_names
(
self
):
# Assume the executables list is valid -- 'check_executable_list()' is
...
...
@@ -156,7 +152,7 @@ class build_exe(Command):
return
None
exe_names
=
[]
for
(
exe_name
,
build_info
)
in
self
.
executables
:
for
(
exe_name
,
build_info
)
in
self
.
executables
:
# @UnusedVariable
exe_names
.
append
(
exe_name
)
return
exe_names
...
...
@@ -164,13 +160,13 @@ class build_exe(Command):
def
get_source_files
(
self
):
self
.
check_executable_list
(
self
.
executables
)
filenames
=
[]
for
(
exe_name
,
build_info
)
in
self
.
executables
:
for
(
exe_name
,
build_info
)
in
self
.
executables
:
# @UnusedVariable
sources
=
build_info
.
get
(
'sources'
)
if
sources
is
None
or
not
isinstance
(
sources
,
(
list
,
tuple
)):
raise
DistutilsSetupError
,
\
(
"in 'executables' option (library '
%
s'), "
raise
DistutilsSetupError
(
"in 'executables' option (library '
%
s'), "
"'sources' must be present and must be "
"a list of source filenames"
)
%
exe_name
"a list of source filenames"
%
exe_name
)
filenames
.
extend
(
sources
)
return
filenames
...
...
@@ -182,10 +178,11 @@ class build_exe(Command):
for
(
exe_name
,
build_info
)
in
executables
:
sources
=
build_info
.
get
(
'sources'
)
if
sources
is
None
or
not
isinstance
(
sources
,
(
list
,
tuple
)):
raise
DistutilsSetupError
,
\
(
"in 'executables' option (library '
%
s'), "
+
"'sources' must be present and must be "
+
"a list of source filenames"
)
%
exe_name
raise
DistutilsSetupError
(
"in 'executables' option (library '
%
s'), "
"'sources' must be present and must be "
"a list of source filenames"
%
exe_name
)
sources
=
self
.
substitute_sources
(
exe_name
,
sources
)
log
.
info
(
"building '
%
s' program"
,
exe_name
)
...
...
distutils.ext/obidistutils/command/build_ext.py
View file @
42c0f1ef
...
...
@@ -4,26 +4,29 @@ Created on 13 fevr. 2014
@author: coissac
'''
try
:
from
Cython.Distutils
import
build_ext
as
ori_build_ext
# @UnresolvedImport
except
ImportError
:
from
distutils.command.build_ext
import
build_ext
as
ori_build_ext
from
distutils.errors
import
DistutilsSetupError
from
distutils
import
log
import
os
from
Cython.Distutils
import
build_ext
as
ori_build_ext
# @UnresolvedImport
from
Cython.Compiler
import
Options
as
cython_options
# @UnresolvedImport
from
distutils.errors
import
DistutilsSetupError
class
build_ext
(
ori_build_ext
):
def
modifyDocScripts
(
self
):
print
>>
open
(
"doc/sphinx/build_dir.txt"
,
"w"
),
self
.
build_lib
build_dir_file
=
open
(
"doc/sphinx/build_dir.txt"
,
"w"
)
print
(
self
.
build_lib
,
file
=
build_dir_file
)
build_dir_file
.
close
()
def
initialize_options
(
self
):
ori_build_ext
.
initialize_options
(
self
)
ori_build_ext
.
initialize_options
(
self
)
# @UndefinedVariable
self
.
littlebigman
=
None
self
.
built_files
=
None
def
finalize_options
(
self
):
ori_build_ext
.
finalize_options
(
self
)
ori_build_ext
.
finalize_options
(
self
)
# @UndefinedVariable
self
.
set_undefined_options
(
'littlebigman'
,
(
'littlebigman'
,
'littlebigman'
))
...
...
@@ -45,8 +48,8 @@ class build_ext(ori_build_ext):
name of the built file (see --> build_files)
"""
sources
=
list
(
sources
)
for
i
in
x
range
(
len
(
sources
)):
print
exe_name
,
sources
[
i
],
for
i
in
range
(
len
(
sources
)):
message
=
"
%
s :->
%
s"
%
(
exe_name
,
sources
[
i
])
if
sources
[
i
][
0
]
==
'@'
:
try
:
filename
=
self
.
built_files
[
sources
[
i
][
1
:]]
...
...
@@ -55,15 +58,15 @@ class build_ext(ori_build_ext):
if
os
.
path
.
isfile
(
tmpfilename
):
filename
=
tmpfilename
else
:
raise
DistutilsSetupError
,
\
(
'The
%
s filename declared in the source '
raise
DistutilsSetupError
(
'The
%
s filename declared in the source '
'files of the program
%
s have not been '
'built by the installation process'
)
%
(
sources
[
i
],
exe_name
)
'built by the installation process'
%
(
sources
[
i
],
exe_name
)
)
sources
[
i
]
=
filename
print
"changed to "
,
filename
log
.
info
(
"
%
s changed to
%
s"
,
message
,
filename
)
else
:
print
" ok"
log
.
info
(
"
%
s ok"
,
message
)
return
sources
...
...
@@ -76,16 +79,17 @@ class build_ext(ori_build_ext):
self
.
check_extensions_list
(
self
.
extensions
)
for
ext
in
self
.
extensions
:
print
"#####>"
,
ext
.
sources
log
.
info
(
"
%
s :->
%
s"
,
ext
.
name
,
ext
.
sources
)
ext
.
sources
=
self
.
cython_sources
(
ext
.
sources
,
ext
)
self
.
build_extension
(
ext
)
def
run
(
self
):
self
.
modifyDocScripts
()
ori_build_ext
.
run
(
self
)
cython_options
.
annotate
=
True
ori_build_ext
.
run
(
self
)
# @UndefinedVariable
distutils.ext/obidistutils/command/build_files.py
View file @
42c0f1ef
...
...
@@ -7,13 +7,8 @@ Created on 20 oct. 2012
import
os.path
from
distutils.core
import
Command
from
distutils.util
import
convert_path
from
distutils
import
log
,
sysconfig
from
distutils.dep_util
import
newer
from
distutils
import
log
class
build_files
(
Command
):
def
initialize_options
(
self
):
...
...
distutils.ext/obidistutils/command/build_filters.py
deleted
100644 → 0
View file @
aa3f94c4
'''
Created on 20 oct. 2012
@author: coissac
'''
from
obidistutils.command.build_scripts
import
build_scripts
class
build_filters
(
build_scripts
):
pass
distutils.ext/obidistutils/command/build_scripts.py
View file @
42c0f1ef
...
...
@@ -6,14 +6,14 @@ Created on 20 oct. 2012
import
os.path
from
distutils.command.build_scripts
import
build_scripts
as
ori_build_scripts
,
\
first_line_re
from
distutils.command.build_scripts
import
build_scripts
as
ori_build_scripts
from
distutils.util
import
convert_path
from
distutils
import
log
,
sysconfig
from
distutils.dep_util
import
newer
from
stat
import
ST_MODE
import
re
first_line_re
=
re
.
compile
(
'^#!.*python[0-9.]*([
\t
].*)?$'
)
class
build_scripts
(
ori_build_scripts
):
...
...
@@ -93,8 +93,10 @@ class build_scripts(ori_build_scripts):
if
self
.
dry_run
:
log
.
info
(
"changing mode of
%
s"
,
F
)
else
:
oldmode
=
os
.
stat
(
F
)[
ST_MODE
]
&
07777
newmode
=
(
oldmode
|
0555
)
&
07777
oldmode
=
os
.
stat
(
F
)[
ST_MODE
]
oldmode
=
oldmode
&
0
o7777
newmode
=
(
oldmode
|
0
o555
)
&
0
o7777
if
newmode
!=
oldmode
:
log
.
info
(
"changing mode of
%
s from
%
o to
%
o"
,
F
,
oldmode
,
newmode
)
...
...
distutils.ext/obidistutils/command/build_sphinx.py
0 → 100644
View file @
42c0f1ef
'''
Created on 10 mars 2015
@author: coissac
'''
from
sphinx.setup_command
import
BuildDoc
as
ori_build_sphinx
# @UnresolvedImport
class
build_sphinx
(
ori_build_sphinx
):
'''
Build Sphinx documentation in html, epub and man formats
'''
description
=
__doc__
def
run
(
self
):
self
.
builder
=
'html'
self
.
finalize_options
()
ori_build_sphinx
.
run
(
self
)
self
.
builder
=
'epub'
self
.
finalize_options
()
ori_build_sphinx
.
run
(
self
)
self
.
builder
=
'man'
self
.
finalize_options
()
ori_build_sphinx
.
run
(
self
)
\ No newline at end of file
distutils.ext/obidistutils/command/install.py
View file @
42c0f1ef
...
...
@@ -3,12 +3,12 @@ Created on 6 oct. 2014
@author: coissac
'''
from
distutils.command.install
import
install
as
install_ori
#from setuptools.command.install import install as install_ori
class
install
(
install_ori
):
def
__init__
(
self
,
dist
):
install_ori
.
__init__
(
self
,
dist
)
self
.
sub_commands
.
insert
(
0
,
(
'build'
,
lambda
self
:
True
))
#
self.sub_commands.insert(0, ('build',lambda self: True))
self
.
sub_commands
.
append
((
'install_sphinx'
,
lambda
self
:
self
.
distribution
.
serenity
))
distutils.ext/obidistutils/command/install_scripts.py
View file @
42c0f1ef
...
...
@@ -3,8 +3,8 @@ Created on 20 oct. 2012
@author: coissac
'''
from
distutils.command.install_scripts
import
install_scripts
as
ori_install_scripts
import
os.path
from
distutils
import
log
...
...
@@ -12,42 +12,32 @@ class install_scripts(ori_install_scripts):
def
initialize_options
(
self
):
ori_install_scripts
.
initialize_options
(
self
)
self
.
deprecated_scripts
=
None
def
revove_dot_py
(
self
):
for
filename
in
self
.
get_outputs
():
pyfile
=
"
%
s.py"
%
filename
if
os
.
path
.
exists
(
pyfile
):
command
=
os
.
path
.
split
(
pyfile
)[
-
1
]
log
.
info
(
'Removing deprecated .py form of the unix command :
%
s (file
%
s)'
%
(
command
,
pyfile
))
if
not
self
.
dry_run
:
os
.
unlink
(
pyfile
)
try
:
if
not
self
.
dry_run
:
os
.
unlink
(
os
.
path
.
join
(
self
.
build_dir
,
command
))
except
:
log
.
info
(
'Unix command
%
s is not present in build dir'
%
command
)
self
.
public_dir
=
None
def
install_public_link
(
self
):
self
.
mkpath
(
self
.
public_dir
)
for
file
in
self
.
get_outputs
():
if
self
.
dry_run
:
log
.
info
(
"changing mode of
%
s"
,
file
)
else
:
log
.
info
(
"exporting file
%
s ->
%
s"
,
file
,
os
.
path
.
join
(
self
.
public_dir
,
os
.
path
.
split
(
file
)[
1
]
))
dest
=
os
.
path
.
join
(
self
.
public_dir
,
os
.
path
.
split
(
file
)[
1
]
)
if
os
.
path
.
exists
(
dest
):
os
.
unlink
(
dest
)
os
.
symlink
(
file
,
dest
)
def
remove_deprecated_script
(
self
):
if
self
.
deprecated_scripts
is
not
None
:
for
f
in
self
.
deprecated_scripts
:
try
:
ff
=
os
.
path
.
join
(
self
.
install_dir
,
f
)
if
not
self
.
dry_run
:
os
.
unlink
(
ff
)
log
.
info
(
'Removing deprecated unix command :
%
s (file :
%
s)'
%
(
f
,
ff
))
ff
=
os
.
path
.
join
(
self
.
build_dir
,
f
)
if
not
self
.
dry_run
:
os