Commit 3ce945b3 by Eric Coissac

Adds the logger to the scaffold call

parent 86341e86
......@@ -94,7 +94,8 @@ def run(config):
genesincontig(cg,r,x)
scaffold(asm,cg,minlink=5,back=int(back),addConnectedLink=False)
scaffold(asm,cg,minlink=5,back=int(back),addConnectedLink=False,
logger=logger)
fastaout = open(output+".fasta","w")
fastaout = sys.stdout
......
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