Patches some minor bugs
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python/orgasm/command/__init__.py
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python/orgasm/command/buildgraph.py
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python/orgasm/command/compact.py
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python/orgasm/command/cutlow.py
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python/orgasm/command/fasta.py
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python/orgasm/command/graphstats.py
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python/orgasm/command/index.py
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python/orgasm/command/list.py
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python/orgasm/command/path.py
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python/orgasm/command/seeds.py
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python/orgasm/command/unfold.py
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python/orgasm/command/unfoldrdna.py
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