The ORGanelle ASseMbler
Caution
This is a BETA version. Do not hesitate to use it but don't be surprised if you find a bug
😃
The ORGanelle ASseMbler aims to target the assembling of small sequences over-represented in a whole genome shotgun sequence dataset. Typically these sequences are
- The organelle genomes
- The mitochondrion genome
- The plastid genome for plants
- The nuclear rDNA cluster including
- the SSU (18S)
- the ITS1
- the TSU (5.6S)
- the ITS2
- the LSU (23S)
The organelle assembler can be installed on your computer following the instructions presented in the manual
You can find a simple tutorial explaining how to assemble a mitochondrion genome from a set of Illumina reads.
The complete manual is available here