Commits · 8fb5e67305c4a62401ed92d5c462cdbf414017f3 · ORG.Asm / ORG.Asm

08 Apr, 2013 7 commits
- Add length constraint · 8fb5e673
  Eric Coissac authored Apr 08, 2013
  
  8fb5e673
- No commit message · e0b7eb6b
  Eric Coissac authored Apr 08, 2013
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- No commit message · 802c9cc2
  Eric Coissac authored Apr 08, 2013
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- No commit message · 46835b17
  Eric Coissac authored Apr 08, 2013
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- No commit message · ad2d5782
  Eric Coissac authored Apr 08, 2013
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  ad2d5782
- patch bug on aho corasick automata · 5d6bdc8f
  Eric Coissac authored Apr 08, 2013
  
  5d6bdc8f
- Add a -M option to orgasmi · 6daa7e02
  Eric Coissac authored Apr 08, 2013
  
  6daa7e02
05 Apr, 2013 4 commits
- No commit message · fc8356f5
  Eric Coissac authored Apr 05, 2013
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- No commit message · 171bf79e
  Eric Coissac authored Apr 05, 2013
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- Remove bugs in the scanIndex method and the score associated to a match. · 556154bf
  Eric Coissac authored Apr 05, 2013
```
score is no more the word count match ing the automata but the count of different 
word matching the automata 
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  556154bf
- The text progress bar · 4a3c3d21
  Eric Coissac authored Apr 05, 2013
  
  4a3c3d21
14 Mar, 2013 1 commit
- Add function for matching protein sequence on reads based on an Aho-Corasick automata · 09bd36be
  Eric Coissac authored Mar 14, 2013
  
  09bd36be
24 Feb, 2013 5 commits
- No commit message · 9881decf
  Eric Coissac authored Feb 24, 2013
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- No commit message · a127f573
  Eric Coissac authored Feb 24, 2013
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- No commit message · 189ed7db
  Eric Coissac authored Feb 24, 2013
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- No commit message · 7fe3d2ff
  Eric Coissac authored Feb 24, 2013
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- No commit message · d23312ef
  Eric Coissac authored Feb 24, 2013
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01 Feb, 2013 1 commit
- Patch index search on reverse strand for read with a length not multiple of 4 · 25431343
  Eric Coissac authored Feb 01, 2013
  
  25431343
30 Jan, 2013 2 commits
- patch index limit in the method getRead and add doc to it. · b49c55ef
  Eric Coissac authored Jan 30, 2013
  
  b49c55ef
- Patch a bug in compare prefix function · 78ca26cd
  Eric Coissac authored Jan 30, 2013
  
  78ca26cd
29 Jan, 2013 4 commits
- Patch a bug in compare prefix function · 90ae2c92
  Eric Coissac authored Jan 29, 2013
  
  90ae2c92
- No commit message · b91cf190
  Eric Coissac authored Jan 29, 2013
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- add several starting points for different dataset · 152d2bfb
  Eric Coissac authored Jan 29, 2013
  
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- my sketch book on assembling · 97e3935c
  Eric Coissac authored Jan 29, 2013
  
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25 Jan, 2013 8 commits
- remove strange import · c5ceb8de
  Eric Coissac authored Jan 25, 2013
  
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- Patch bug in option handling · dfd5a0dd
  Eric Coissac authored Jan 25, 2013
  
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- switch to -O5 · 5452cd78
  Eric Coissac authored Jan 25, 2013
  
  5452cd78
- my sketch book on assembling · 3af19ea1
  Eric Coissac authored Jan 25, 2013
  
  3af19ea1
- add a seed for sartidia sample data · 6edeb1fc
  Eric Coissac authored Jan 25, 2013
  
  6edeb1fc
- Add parameters to control the run procedure · 632a0fb8
  Eric Coissac authored Jan 25, 2013
  
  632a0fb8
- A first version of the sequence indexer program accepting filename as arguments · f6b75763
  Eric Coissac authored Jan 25, 2013
  
  f6b75763
- Patch bugs in the decoding functions · 12d23da1
  Eric Coissac authored Jan 25, 2013
  
  12d23da1
21 Jan, 2013 1 commit
- Shorten the length of microbubble · 67bbf042
  Eric Coissac authored Jan 21, 2013
  
  67bbf042
16 Jan, 2013 1 commit
- some change in my draft · 2ca43459
  Eric Coissac authored Jan 16, 2013
  
  2ca43459
11 Jan, 2013 1 commit
- Add a subclass to DiGraph able to manage several edge between two vertices · ac9abfc4
  Eric Coissac authored Jan 11, 2013
  
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10 Jan, 2013 4 commits
- change LLU to ULL · 4eced5aa
  Eric Coissac authored Jan 10, 2013
  
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- mon brouillon on continue · cf25886a
  Eric Coissac authored Jan 10, 2013
  
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- change the direction of the path in path iterator · fbf6b44a
  Eric Coissac authored Jan 10, 2013
  
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- some small rewriting · d3698ac2
  Eric Coissac authored Jan 10, 2013
  
  d3698ac2
07 Jan, 2013 1 commit
- [ADD] function to export graph as gml · 3f9571af
  Frédéric Boyer authored Jan 07, 2013
  
  3f9571af