Tag version 1.0.3

VERSION

-1.0.1
\ No newline at end of file
+1.0.3
\ No newline at end of file

python/orgasm/assembler/_assembler.pyx

@@ -472,14 +472,14 @@ cdef class StemIterator:
 
                 if circle:
                     minabs = min(abs(i) for i in cc)
-                    print(minabs,file=sys.stderr)
+                    # print(minabs,file=sys.stderr)
                     if minabs in cc:
                         first = minabs
-                        print("in",file=sys.stderr)
+                        # print("in",file=sys.stderr)
                     else:
 #                        first = sons(graph,-minabs).pop()
                         first = -minabs
-                        print("out",file=sys.stderr)
+                        # print("out",file=sys.stderr)
                     nn = first
                     path=[first]
                     lsequence=[]

python/orgasm/assembler/_tango.pyx

@@ -193,7 +193,7 @@ cpdef AsmbGraph tango(Assembler self,
             
             if progress and (icycle % 50)==0 and sys.stderr.isatty(): 
                 print("%s : %d bp [%4.1f%% fake reads; Stack size: %8d / %6.2f %d  Gene: %s " % (wheel[(icycle//10) % 4],
-                                                                                                 len(graph)/2,
+                                                                                                 int(len(graph)//2),
                                                                                                  float(fake)/(len(graph)+1)*200.,
                                                                                                  len(seeds),
                                                                                                  growing,
@@ -205,11 +205,11 @@ cpdef AsmbGraph tango(Assembler self,
             lgraph = graph.nodeCount()                                                                                           
             if logger is not None and lgraph!=lastprint and lgraph % 20000==0:
                 lastprint=lgraph
-                logger.info("%d bp [%4.1f%% fake reads; Stack size: %8d / %6.2f %d  Gene: %s " % (lgraph//2,
+                logger.info("%d bp [%4.1f%% fake reads; Stack size: %8d / %6.2f %d  Gene: %s " % (int(lgraph//2),
                                                                                                   float(fake)/(lgraph+1)*200.,
-                                                                                                   PyList_GET_SIZE(seeds),
+                                                                                                   int(PyList_GET_SIZE(seeds)),
                                                                                                    growing,
-                                                                                                   delta,
+                                                                                                   int(delta),
                                                                                                    lastgene))
                 
     

python/orgasm/commands/graph.py

@@ -199,7 +199,6 @@ def run(config):
     logger=config['orgasm']['logger']
     output = getOutput(config)
 
-
     if not pathlib.Path(output+'.gml').is_file():
         logger.error("No assembly graph available")
         sys.exit(1)

python/orgasm/version.py

 major = 1
 minor = '0'
-serial= '1'
+serial= '3'
 
 version = "%d.%s.%s" % (major,minor,serial)