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Makefile Loading commit data...
README.txt Loading commit data...
aligngivenpath.cpp Loading commit data...
aligngivenpathsw.cpp Loading commit data...
aligntwomsas.cpp Loading commit data...
aligntwoprofs.cpp Loading commit data...
aln.cpp Loading commit data...
alpha.cpp Loading commit data...
alpha.h Loading commit data...
anchors.cpp Loading commit data...
bittraceback.cpp Loading commit data...
blosum62.cpp Loading commit data...
blosumla.cpp Loading commit data...
clust.cpp Loading commit data...
clust.h Loading commit data...
cluster.cpp Loading commit data...
cluster.h Loading commit data...
clustset.h Loading commit data...
clustsetdf.h Loading commit data...
clustsetmsa.h Loading commit data...
clwwt.cpp Loading commit data...
color.cpp Loading commit data...
cons.cpp Loading commit data...
diaglist.cpp Loading commit data...
diaglist.h Loading commit data...
diffobjscore.cpp Loading commit data...
diffpaths.cpp Loading commit data...
difftrees.cpp Loading commit data...
difftreese.cpp Loading commit data...
distcalc.cpp Loading commit data...
distcalc.h Loading commit data...
distfunc.cpp Loading commit data...
distfunc.h Loading commit data...
distpwkimura.cpp Loading commit data...
domuscle.cpp Loading commit data...
dosp.cpp Loading commit data...
dpregionlist.h Loading commit data...
dpreglist.cpp Loading commit data...
dpreglist.h Loading commit data...
drawtree.cpp Loading commit data...
edgelist.cpp Loading commit data...
edgelist.h Loading commit data...
enumopts.cpp Loading commit data...
enumopts.h Loading commit data...
enums.h Loading commit data...
enumtostr.cpp Loading commit data...
estring.cpp Loading commit data...
estring.h Loading commit data...
fasta.cpp Loading commit data...
fasta2.cpp Loading commit data...
fastclust.cpp Loading commit data...
fastdist.cpp Loading commit data...
fastdistjones.cpp Loading commit data...
fastdistkbit.cpp Loading commit data...
fastdistkmer.cpp Loading commit data...
fastdistmafft.cpp Loading commit data...
fastdistnuc.cpp Loading commit data...
fastscorepath2.cpp Loading commit data...
finddiags.cpp Loading commit data...
finddiagsn.cpp Loading commit data...
gapscoredimer.h Loading commit data...
gatest.cpp Loading commit data...
glbalign.cpp Loading commit data...
glbalign352.cpp Loading commit data...
glbaligndiag.cpp Loading commit data...
glbalignla.cpp Loading commit data...
glbalignle.cpp Loading commit data...
glbalignns.cpp Loading commit data...
glbalignsimple.cpp Loading commit data...
glbalignsp.cpp Loading commit data...
glbalignspn.cpp Loading commit data...
glbalignss.cpp Loading commit data...
glbalndimer.cpp Loading commit data...
globals.cpp Loading commit data...
globalslinux.cpp Loading commit data...
globalsosx.cpp Loading commit data...
globalsother.cpp Loading commit data...
globalswin32.cpp Loading commit data...
gonnet.cpp Loading commit data...
gonnet.h Loading commit data...
gotowt.cpp Loading commit data...
henikoffweight.cpp Loading commit data...
henikoffweightpb.cpp Loading commit data...
html.cpp Loading commit data...
hydro.cpp Loading commit data...
intmath.cpp Loading commit data...
intmath.h Loading commit data...
local.cpp Loading commit data...
main.cpp Loading commit data...
make.err Loading commit data...
make.out Loading commit data...
makerootmsa.cpp Loading commit data...
makerootmsab.cpp Loading commit data...
maketree.cpp Loading commit data...
mhack.cpp Loading commit data...
mk Loading commit data...
mpam200.cpp Loading commit data...
msa.cpp Loading commit data...
msa.h Loading commit data...
msa2.cpp Loading commit data...
msadist.h Loading commit data...
msadistkimura.cpp Loading commit data...
msadistkimura.h Loading commit data...
msadistmafft.h Loading commit data...
msf.cpp Loading commit data...
muscle.cpp Loading commit data...
muscle.h Loading commit data...
muscle.make.stderr.txt Loading commit data...
muscle.make.stdout.txt Loading commit data...
muscle.vcproj Loading commit data...
muscle21 Loading commit data...
muscle21.vcproj Loading commit data...
muscleout.cpp Loading commit data...
nucmx.cpp Loading commit data...
nwdasimple.cpp Loading commit data...
nwdasimple2.cpp Loading commit data...
nwdasmall.cpp Loading commit data...
nwrec.cpp Loading commit data...
nwsmall.cpp Loading commit data...
objscore.cpp Loading commit data...
objscore.h Loading commit data...
objscore2.cpp Loading commit data...
objscoreda.cpp Loading commit data...
onexception.cpp Loading commit data...
options.cpp Loading commit data...
outweights.cpp Loading commit data...
pam200mafft.cpp Loading commit data...
params.cpp Loading commit data...
params.h Loading commit data...
phy.cpp Loading commit data...
phy2.cpp Loading commit data...
phy3.cpp Loading commit data...
phy4.cpp Loading commit data...
phyfromclust.cpp Loading commit data...
phyfromfile.cpp Loading commit data...
physeq.cpp Loading commit data...
phytofile.cpp Loading commit data...
posgap.cpp Loading commit data...
ppscore.cpp Loading commit data...
profdb.cpp Loading commit data...
profile.cpp Loading commit data...
profile.h Loading commit data...
profilefrommsa.cpp Loading commit data...
progalign.cpp Loading commit data...
progress.cpp Loading commit data...
progressivealign.cpp Loading commit data...
pwpath.cpp Loading commit data...
pwpath.h Loading commit data...
readmx.cpp Loading commit data...
realigndiffs.cpp Loading commit data...
realigndiffse.cpp Loading commit data...
redblack.cpp Loading commit data...
refine.cpp Loading commit data...
refinehoriz.cpp Loading commit data...
refinesubfams.cpp Loading commit data...
refinetree.cpp Loading commit data...
refinetreee.cpp Loading commit data...
refinevert.cpp Loading commit data...
refinew.cpp Loading commit data...
releases.txt Loading commit data...
savebest.cpp Loading commit data...
scoredist.cpp Loading commit data...
scoregaps.cpp Loading commit data...
scorehistory.cpp Loading commit data...
scorehistory.h Loading commit data...
scoremx.cpp Loading commit data...
scorepp.cpp Loading commit data...
seq.cpp Loading commit data...
seq.h Loading commit data...
seqvect.cpp Loading commit data...
seqvect.h Loading commit data...
setblosumweights.cpp Loading commit data...
setgscweights.cpp Loading commit data...
setnewhandler.cpp Loading commit data...
spfast.cpp Loading commit data...
sptest.cpp Loading commit data...
stabilize.cpp Loading commit data...
subfam.cpp Loading commit data...
subfams.cpp Loading commit data...
svnmods.h Loading commit data...
svnversion.h Loading commit data...
sw.cpp Loading commit data...
termgaps.cpp Loading commit data...
textfile.cpp Loading commit data...
textfile.h Loading commit data...
threewaywt.cpp Loading commit data...
timing.h Loading commit data...
tomhydro.cpp Loading commit data...
traceback.cpp Loading commit data...
tracebackopt.cpp Loading commit data...
tracebacksw.cpp Loading commit data...
tree.h Loading commit data...
treefrommsa.cpp Loading commit data...
types.h Loading commit data...
typetostr.cpp Loading commit data...
unixio.h Loading commit data...
upgma2.cpp Loading commit data...
usage.cpp Loading commit data...
validateids.cpp Loading commit data...
version.txt Loading commit data...
vtml2.cpp Loading commit data...
writescorefile.cpp Loading commit data...