Commits · 115a1955c5883ffd0909cb05e887f70fa561b6e6 · ORG.Asm / ORG.Annotate

13 Apr, 2016 2 commits
- Change tha dash bang of the csh shell scripts · 115a1955
  Eric Coissac authored Apr 13, 2016
  
  115a1955
- Add the latest tcsh able to deal with large PATH (at least 4096) · 32011d9b
  Eric Coissac authored Apr 13, 2016
  
  32011d9b
18 Dec, 2015 3 commits
- Add the name of the org.annot pipeline in the CDS inference · 497194fa
  Eric Coissac authored Dec 18, 2015
  
  497194fa
- Specify the genetic code during the aragorn call. · 6f18008c
  Eric Coissac authored Dec 18, 2015
  
  6f18008c
- Close #15. Actually the bug in intron location was related to a · dac4fb73
  Eric Coissac authored Dec 18, 2015
```
misinterpretation of the aragorn output format. Now tRNA, and intron
location are coherent with most of the locations extracted from genbank
file with one or 2 base pairs of difference.
```
  dac4fb73
28 Nov, 2015 1 commit
- Patch a bug on the generation of the location of tRNA for gene on · 72990545
  Eric Coissac authored Nov 28, 2015
```
reverse complement strand with an intron.
```
  72990545
15 Nov, 2015 1 commit
- minor addition in cds/compare · e865ea93
  Alain Viari authored Nov 15, 2015
  
  e865ea93
14 Nov, 2015 2 commits
- removed need of R igraph from chlorodb/subdb · 574aace9
  Alain Viari authored Nov 14, 2015
  
  574aace9
- minor bug in chlorodb · 7017655a
  Alain Viari authored Nov 14, 2015
  
  7017655a
13 Nov, 2015 5 commits
- cds test on core and shell · 9be1f2c2
  Alain Viari authored Nov 13, 2015
  
  9be1f2c2
- cds go_test bug fixed · f73133dc
  Alain Viari authored Nov 13, 2015
  
  f73133dc
- added test for chlorodb · 639cbbdc
  Alain Viari authored Nov 13, 2015
  
  639cbbdc
- add doc for chlorodb · 55fd2882
  Alain Viari authored Nov 13, 2015
  
  55fd2882
- cds/tools/chlorodb added · 0579e878
  alain viari authored Nov 13, 2015
  
  0579e878
11 Nov, 2015 1 commit
- summary added in comparison · 9a267727
  alain viari authored Nov 11, 2015
  
  9a267727
10 Nov, 2015 2 commits
- fixed too many partial CDS bug · d733a46f
  alain viari authored Nov 10, 2015
  
  d733a46f
- added cds/tools compare and chrlorodb · 31633e6b
  alain viari authored Nov 10, 2015
  
  31633e6b
09 Nov, 2015 7 commits
- Change minimum length for considering a match from 1000 to 100. · 6bd827ca
  Eric Coissac authored Nov 09, 2015
  
  6bd827ca
- remove the debug code · 7a805dc6
  Eric Coissac authored Nov 09, 2015
  
  7a805dc6
- Patch bug in the inverted repeats annotation · 73e4e016
  Eric Coissac authored Nov 09, 2015
```
Realize the annotation on the normalized chromosome
```
  73e4e016
- small modifications for the luke cluster · 55a83611
  Eric Coissac authored Nov 09, 2015
  
  55a83611
- change the call to awk · fa0b02e7
  Eric Coissac authored Nov 09, 2015
  
  fa0b02e7
- Patches for the cluster luke · 54cfd925
  Eric Coissac authored Nov 09, 2015
  
  54cfd925
- added cds/tools/compare · 07fb256b
  alain viari authored Nov 09, 2015
  
  07fb256b
08 Nov, 2015 6 commits
- go_pass1 moved to bin · 6be837df
  alain viari authored Nov 08, 2015
  
  6be837df
- fixed bug : CDS product not quoted · 412798e7
  alain viari authored Nov 08, 2015
  
  412798e7
- Switch from awk to gawk · 70b104ab
  Eric Coissac authored Nov 08, 2015
  
  70b104ab
- default PASS1_SPEEDUP set to 0 · 38d036b8
  alain viari authored Nov 08, 2015
  
  38d036b8
- CDS detector added · a72f30f9
  alain viari authored Nov 08, 2015
  
  a72f30f9
- CDS detector added · 93fac7a7
  alain viari authored Nov 08, 2015
  
  93fac7a7
12 Oct, 2015 2 commits
- enforce the annotation of full-length rrna genes only · 0669e643
  Eric Coissac authored Oct 12, 2015
  
  0669e643
- First version including the rRNA detector · 865e2626
  Eric Coissac authored Oct 12, 2015
  
  865e2626
11 Oct, 2015 1 commit
- First version of the tRNA detector and of the global organnot.sh script · f2a75cf9
  Eric Coissac authored Oct 11, 2015
  
  f2a75cf9
10 Oct, 2015 1 commit
- First version of the scripts for building the CAU tRNA database · 443a0446
  Eric Coissac authored Oct 10, 2015
  
  443a0446
08 Oct, 2015 3 commits
- First version of if inverted repeat annotation tools · 9d13deae
  Eric Coissac authored Oct 08, 2015
  
  9d13deae
- rename the main normalization script in go_normalize.sh · e9488f88
  Eric Coissac authored Oct 08, 2015
  
  e9488f88
- A first functionnal version of the normalize_plastid.sh script. · 78c4a4d8
  Eric Coissac authored Oct 08, 2015
  
  78c4a4d8
07 Oct, 2015 2 commits
- Patch building of the Single copy reference DB to make a single blast · 9bad3443
  Eric Coissac authored Oct 07, 2015
```
database for Large and Small Single copy
```
  9bad3443
- Add scripts to generate reference DBs for LSC and SSC · 77fd69c9
  Eric Coissac authored Oct 07, 2015
  
  77fd69c9
02 Oct, 2015 1 commit
- First commit - second part · 20229640
  Eric Coissac authored Oct 02, 2015
  
  20229640