Commit f84fd562 authored by Eric Coissac's avatar Eric Coissac

Patch a bug leading to add extra quote to command line parametters

parent 0ecdb8d9
......@@ -29,7 +29,7 @@ then
exit 1
fi
set -- $options
eval set -- "$options"
while [ $# -gt 0 ]
do
......@@ -63,13 +63,14 @@ pushTmpDir ORG.organnot
else
QUERY="$1"
fi
RESULTS=$(basename ${QUERY/.*/})
LOG="${CALL_DIR}/${RESULTS}.log"
rm -f ${LOG}
openLogFile ${LOG}
if [ "$irdetection"=="yes" ]; then
loginfo "Normalizing the structure of the Chloroplast sequence..."
......
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