Commit 9a267727 authored by alain viari's avatar alain viari

summary added in comparison

parent 0eb38db3
#
# Compare CDS prediction to Reality
#
go_compare.sh reference predicted
reference: Gbk/Embl file
predicted: Gbk/Embl file
output on stdout
#
# Summarize comparisons
#
go_summarize.sh *.cmp
*.cmp comparison files (output of go_compare.sh)
output :
compare.txt : space delimited format summary
compare.pdf : graphics summary
......@@ -3,7 +3,7 @@
# compare CDS annotation in reference file to predicted file
# annotation file are in Genbank/Embl format
#
# usage: go_compare reference predicted
# usage: go_compare.sh reference predicted
#
# output on stdout
#
......
#
# summarize comparison
#
# run after go_compare.sh
#
# usage: go_summarize.sh *.cmp
#
#
unsetenv ORG_SOURCED
setenv ORG_HOME `dirname $0`/../../../..
source $ORG_HOME/scripts/csh_init.sh
NeedArg 1
egrep '^#|^MATCH' $* | awk -f $LIB_DIR/summary.cmp.awk > compare.txt
$LIB_DIR/summarize_cmp.r
exit 0
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment