Commit 93fac7a7 by alain viari

CDS detector added

parent cf7169a7
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o pb compil muscle sous linux CentOS
o nettoyer le makefile de repseek
o revoir les makefile de repseek, muscle et sumatra (target clean)
o CDS speedup à tester
o CDS ajouter tools/dbchloro et tools/compare
accd accD 381 1:381 MONEX acetyl-CoA_carboxylase_beta_subunit
atpa atpA 498 1:491_2:5_3:2 POLYEX ATP_synthase_CF1_alpha_subunit
atpb atpB 497 1:490_2:6_5:1 POLYEX ATP_synthase_CF1_beta_subunit
atpe atpE 496 1:493_3:3 POLYEX ATP_synthase_CF1_epsilon_subunit
atpf atpF 483 1:80_2:401_3:1_4:1 POLYEX ATP_synthase_CF0_B_subunit
atph atpH 499 1:499 MONEX ATP_synthase_CF0_C_subunit
atpi atpI 496 1:492_2:1_3:1_4:1_7:1 POLYEX ATP_synthase_CF0_A_subunit
ccsa ccsA 477 1:476_2:1 POLYEX cytochrome_c_biogenesis_protein
cema cemA 454 1:453_2:1 POLYEX envelope_membrane_protein
clpp clpP 445 1:128_2:18_3:299 POLYEX ATP-dependent_Clp_protease_proteolytic_subunit
infa infA 262 1:261_2:1 POLYEX translation_initiation_factor_1
matk matK 410 1:410 MONEX maturase_K
ndha ndhA 384 1:9_2:375 POLYEX NADH_dehydrogenase_subunit_1
ndhb ndhB 699 1:5_2:693_3:1 POLYEX NADH_dehydrogenase_subunit_2
ndhc ndhC 385 1:384_2:1 POLYEX NADH_dehydrogenase_subunit_3
ndhd ndhD 383 1:383 MONEX NADH_dehydrogenase_subunit_4
ndhe ndhE 395 1:395 MONEX NADH_dehydrogenase_subunit_4L
ndhf ndhF 384 1:384 MONEX NADH_dehydrogenase_subunit_5
ndhg ndhG 386 1:386 MONEX NADH_dehydrogenase_subunit_6
ndhh ndhH 406 1:400_2:6 POLYEX NADH_dehydrogenase_subunit_7
ndhi ndhI 386 1:386 MONEX NADH_dehydrogenase_subunit_I
ndhj ndhJ 387 1:387 MONEX NADH_dehydrogenase_subunit_J
ndhk ndhK 373 1:372_2:1 POLYEX NADH_dehydrogenase_subunit_K
peta petA 486 1:486 MONEX cytochrome_f
petb petB 493 1:97_2:395_3:1 POLYEX cytochrome_b6
petd petD 486 1:105_2:381 POLYEX cytochrome_b6/f_complex_subunit_IV
petg petG 494 1:493_2:1 POLYEX cytochrome_b6/f_complex_subunit_V
petl petL 434 1:434 MONEX cytochrome_b6/f_complex_subunit_VI
petn petN 459 1:459 MONEX cytochrome_b6/f_complex_subunit_VIII
psaa psaA 494 1:482_2:5_3:3_4:4 POLYEX photosystem_I_P700_chlorophyll_a_apoprotein_A1
psab psaB 494 1:483_2:8_3:1_4:1_7:1 POLYEX photosystem_I_P700_chlorophyll_a_apoprotein_A2
psac psaC 498 1:491_2:4_3:3 POLYEX photosystem_I_subunit_VII
psai psaI 467 1:466_2:1 POLYEX photosystem_I_subunit_VIII
psaj psaJ 486 1:485_2:1 POLYEX photosystem_I_subunit_IX
psba psbA 506 1:484_2:9_4:2_5:3_6:5_11:3 POLYEX photosystem_II_protein_D1
psbb psbB 486 1:479_2:4_3:1_4:1_5:1 POLYEX photosystem_II_47_kDa_protein
psbc psbC 490 1:476_2:7_3:5_5:1_11:1 POLYEX photosystem_II_44_kDa_protein
psbd psbD 493 1:485_2:3_3:4_11:1 POLYEX photosystem_II_protein_D2
psbe psbE 492 1:491_3:1 POLYEX photosystem_II_protein_V
psbf psbF 490 1:489_2:1 POLYEX photosystem_II_protein_VI
psbh psbH 494 1:494 MONEX photosystem_II_protein_H
psbi psbI 496 1:495_2:1 POLYEX photosystem_II_protein_I
psbj psbJ 494 1:493_2:1 POLYEX photosystem_II_protein_J
psbk psbK 492 1:489_2:1_3:2 POLYEX photosystem_II_protein_K
psbl psbL 447 1:447 MONEX photosystem_II_protein_L
psbm psbM 448 1:447_2:1 POLYEX photosystem_II_protein_M
psbn psbN 493 1:491_2:1_3:1 POLYEX photosystem_II_protein_N
psbt psbT 494 1:491_2:3 POLYEX photosystem_II_protein_T
psbz psbZ 439 1:439 MONEX photosystem_II_protein_Z
rbcl rbcL 500 1:491_2:3_3:2_5:2_8:1_10:1 POLYEX ribulose-1,5-bisphosphate_carboxylase/oxygenase_large_subunit
rpl14 rpl14 510 1:506_2:2_3:2 POLYEX ribosomal_protein_L14
rpl16 rpl16 510 1:138_2:368_3:1_4:3 POLYEX ribosomal_protein_L16
rpl2 rpl2 800 1:101_2:698_5:1 POLYEX ribosomal_protein_L2
rpl20 rpl20 501 1:501 MONEX ribosomal_protein_L20
rpl22 rpl22 431 1:429_2:2 POLYEX ribosomal_protein_L22
rpl23 rpl23 787 1:782_2:2_3:1_4:2 POLYEX ribosomal_protein_L23
rpl32 rpl32 474 1:474 MONEX ribosomal_protein_L32
rpl33 rpl33 462 1:462 MONEX ribosomal_protein_L33
rpl36 rpl36 504 1:504 MONEX ribosomal_protein_L36
rpoa rpoA 485 1:483_2:2 POLYEX RNA_polymerase_alpha_subunit
rpob rpoB 481 1:475_2:2_3:1_9:1_10:1_11:1 POLYEX RNA_polymerase_beta_subunit
rpoc1 rpoC1 482 1:133_2:343_3:2_9:1_10:1_12:2 POLYEX RNA_polymerase_beta'_subunit
rpoc2 rpoC2 484 1:480_2:1_3:3 POLYEX RNA_polymerase_beta''_subunit
rps11 rps11 507 1:503_3:4 POLYEX ribosomal_protein_S11
rps12 rps12 791 1:86_2:127_3:578 POLYEX ribosomal_protein_S12
rps14 rps14 505 1:501_2:4 POLYEX ribosomal_protein_S14
rps15 rps15 480 1:479_2:1 POLYEX ribosomal_protein_S15
rps16 rps16 381 1:58_2:323 POLYEX ribosomal_protein_S16
rps18 rps18 496 1:493_3:3 POLYEX ribosomal_protein_S18
rps19 rps19 576 1:570_2:2_3:4 POLYEX ribosomal_protein_S19
rps2 rps2 503 1:499_4:2_5:2 POLYEX ribosomal_protein_S2
rps3 rps3 508 1:503_2:1_3:4 POLYEX ribosomal_protein_S3
rps4 rps4 508 1:507_2:1 POLYEX ribosomal_protein_S4
rps7 rps7 853 1:853 MONEX ribosomal_protein_S7
rps8 rps8 511 1:507_3:2_4:2 POLYEX ribosomal_protein_S8
ycf1 ycf1 408 1:406_2:2 POLYEX hypothetical_chloroplast_RF1
ycf2 ycf2 654 1:649_2:5 POLYEX Ycf2
ycf3 ycf3 482 1:75_2:5_3:402 POLYEX photosystem_I_assembly_protein_Ycf3
ycf4 ycf4 475 1:472_2:3 POLYEX photosystem_I_assembly_protein_Ycf4
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