Commit 7017655a authored by Alain Viari's avatar Alain Viari

minor bug in chlorodb

parent edd07fd7
...@@ -36,7 +36,7 @@ cd $DB_BASE/info ...@@ -36,7 +36,7 @@ cd $DB_BASE/info
if (! -e $DB_BASE/parameters.sh) then if (! -e $DB_BASE/parameters.sh) then
Notify "no $DB_BASE/parameters.sh found : creating one for you" Notify "no $DB_BASE/parameters.sh found : creating one for you"
@ n = `find $DB_BASE/download -depth 1 -type f -print | wc -l` @ n = `find $DB_BASE/download -maxdepth 1 -type f -print | wc -l`
@ cor_cutoff = $n / 2 @ cor_cutoff = $n / 2
@ atg_cutoff = $n / 10 @ atg_cutoff = $n / 10
@ dbs_cutoff = $n / 4 @ dbs_cutoff = $n / 4
...@@ -85,7 +85,7 @@ source $DB_BASE/parameters.sh ...@@ -85,7 +85,7 @@ source $DB_BASE/parameters.sh
# temporarily uncompress # temporarily uncompress
# #
set ff = `find $DB_BASE/download -depth 1 -name \*.gz -print` set ff = `find $DB_BASE/download -maxdepth 1 -name \*.gz -print`
if ($#ff != 0) then if ($#ff != 0) then
Notify "uncompressing $#ff entries" Notify "uncompressing $#ff entries"
...@@ -98,7 +98,7 @@ endif ...@@ -98,7 +98,7 @@ endif
# convert gbk/embl to fasta # convert gbk/embl to fasta
# #
set ff = `find $DB_BASE/download -depth 1 \( -name \*.gbk -or -name \*.embl \) -print` set ff = `find $DB_BASE/download -maxdepth 1 \( -name \*.gbk -or -name \*.embl \) -print`
Notify "convert $#ff gbk/embl entries to fasta" Notify "convert $#ff gbk/embl entries to fasta"
...@@ -241,7 +241,7 @@ endif ...@@ -241,7 +241,7 @@ endif
# recompress entries # recompress entries
# #
set ff = `find $DB_BASE/download -depth 1 -type f -print` set ff = `find $DB_BASE/download -maxdepth 1 -type f -print`
if ($#ff != 0) then if ($#ff != 0) then
Notify "recompressing $#ff entries" Notify "recompressing $#ff entries"
...@@ -252,7 +252,7 @@ endif ...@@ -252,7 +252,7 @@ endif
# compress fasta # compress fasta
set ff = `find $DB_BASE/fasta -depth 1 -name \*.fst -print` set ff = `find $DB_BASE/fasta -maxdepth 1 -name \*.fst -print`
if ($#ff != 0) then if ($#ff != 0) then
Notify "compressing $#ff fasta entries" Notify "compressing $#ff fasta entries"
......
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