Commit 35e27b66 by Eric Coissac

Patch a bug leading to a double pseudogene tagging

parent 318327af
......@@ -181,12 +181,15 @@ function Unk(s) {
QQualifier("product", Product)
QQualifier("inference", "similar to DNA sequence:" Simil)
QQualifier("inference", "org.annot -- detect pass:" PassType ":" PassInfo)
if (match(Translat,/\*/)>0) {
QQualifier("pseudogene","unknown")
QQualifier("note","nonfunctional due to stop codon")
}
if (FrameShift==0)
if (FrameShift==0) {
if (match(Translat,/\*/)>0) {
QQualifier("pseudogene","unknown")
QQualifier("note","nonfunctional due to stop codon")
}
QQualifier("translation", Translat)
}
if (Nexon > 1) {
for (i = 1 ; i <= Nexon ; i++) {
......
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