Commit 30f2caea authored by Eric Coissac's avatar Eric Coissac

Switch to the speedup mode because of the slow down imposed by the new

exonarate parametters
parent 04e163d5
...@@ -14,12 +14,14 @@ AssignUndef TMP_CLEANUP 1 ...@@ -14,12 +14,14 @@ AssignUndef TMP_CLEANUP 1
# #
# pass1: exonerate speedup # pass1: exonerate speedup
# #
AssignUndef PASS1_SPEEDUP 0 AssignUndef PASS1_SPEEDUP 1
AssignUndef PASS1_SLOWDOWN 0 AssignUndef PASS1_SLOWDOWN 0
AssignUndef PASS1_BLASTX_FILTER_IDMIN 70 AssignUndef PASS1_BLASTX_FILTER_IDMIN 80
AssignUndef PASS1_BLASTX_FILTER_NBMIN 50 AssignUndef PASS1_BLASTX_FILTER_NBMIN 20
AssignUndef PASS1_BLASTX_FILTER_NBMAX 200 AssignUndef PASS1_BLASTX_FILTER_NBMAX 50
AssignUndef PASS1_BLASTX_FILTER_COMIN 0.8
AssignUndef PASS1_BLASTX_FILTER_GCODE 11
# #
# pass1: exonerate parameters # pass1: exonerate parameters
......
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