Commit 10e92164 authored by Eric Coissac's avatar Eric Coissac

Makes modification on the sequence header and feature source

parent 12b6c560
......@@ -435,10 +435,11 @@ pushTmpDir ORG.organnot
echo "XX"
echo "PR Project:${project};"
echo "XX"
echo "DE XXX"
else
split80 "${organism} ${defline}." "DE "
fi
split80 "${organism} ${defline}." "DE "
echo "DE "
echo "XX"
loginfo "Done."
......@@ -482,9 +483,9 @@ pushTmpDir ORG.organnot
loginfo "Done."
loginfo "Ordering annotations..."
$AwkCmd '(entry && /^.....(misc|repeat|rRNA|tRNA|gene|source)/) { \
$AwkCmd '(entry && /^.....(misc|repeat|rRNA|tRNA|CDS|source)/) { \
print pos,entry } \
/^.....(misc|repeat|rRNA|tRNA|gene|source)/ { \
/^.....(misc|repeat|rRNA|tRNA|CDS|source)/ { \
match($3,"[0-9][0-9]*"); \
pos=substr($3,RSTART,RLENGTH)*1000 + 1; \
entry=$0; \
......
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment