Commit 0feda4b7 authored by Eric Coissac's avatar Eric Coissac

Add reference databases for LSC and SSC

parent 77fd69c9
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2015-10-07 11:25:33 [OA INFO ] 89006 -- Selecting Viridiplantae genebank entries...
2015-10-07 11:25:42 [OA INFO ] 89006 -- --> 695 entries selected
2015-10-07 11:25:42 [OA INFO ] 89006 -- Done
2015-10-07 11:25:42 [OA INFO ] 89006 -- Extracting Long Single Copies (LSC)...
2015-10-07 11:26:36 [OA INFO ] 89006 -- --> 64 retreived sequences
2015-10-07 11:26:36 [OA INFO ] 89006 -- Done
2015-10-07 11:26:36 [OA INFO ] 89006 -- Building LSC coorientation graph...
2015-10-07 11:26:36 [OA INFO ] 89127 -- Build temporary blast DB...
2015-10-07 11:26:36 [OA INFO ] 89127 -- Done
2015-10-07 11:26:36 [OA INFO ] 89127 -- Running Blast...
2015-10-07 11:27:47 [OA INFO ] 89127 -- Done
2015-10-07 11:27:47 [OA INFO ] 89006 -- --> 6 connected componants
2015-10-07 11:27:47 [OA INFO ] 89006 -- Done
2015-10-07 11:27:47 [OA INFO ] 89006 -- Indexing LCS...
2015-10-07 11:27:47 [OA INFO ] 89006 -- Done
2015-10-07 11:27:47 [OA INFO ] 89006 -- Extracting main connected components for LCS...
2015-10-07 11:27:48 [OA INFO ] 89006 -- --> 40 sequences
2015-10-07 11:27:48 [OA INFO ] 89006 -- Done
2015-10-07 11:27:48 [OA INFO ] 89006 -- Extracting second connected components for LCS...
2015-10-07 11:27:48 [OA INFO ] 89006 -- --> 5 sequences
2015-10-07 11:27:48 [OA INFO ] 89006 -- Done
2015-10-07 11:27:48 [OA INFO ] 89006 -- merging both connected components for LCS...
2015-10-07 11:27:48 [OA INFO ] 89006 -- --> 45 sequences in total
2015-10-07 11:27:48 [OA INFO ] 89006 -- Done
2015-10-07 11:27:48 [OA INFO ] 89006 -- Checking LCS homogeneity...
2015-10-07 11:27:48 [OA INFO ] 89258 -- Build temporary blast DB...
2015-10-07 11:27:48 [OA INFO ] 89258 -- Done
2015-10-07 11:27:48 [OA INFO ] 89258 -- Running Blast...
2015-10-07 11:28:50 [OA INFO ] 89258 -- Done
2015-10-07 11:28:50 [OA INFO ] 89006 -- --> 1 connected componants
2015-10-07 11:28:50 [OA INFO ] 89006 -- Done
2015-10-07 11:28:50 [OA INFO ] 89006 -- Installing LCS reference databases...
2015-10-07 11:28:50 [OA INFO ] 89006 -- Done
2015-10-07 11:28:50 [OA INFO ] 89006 -- Extracting Short Single Copies (SSC)...
2015-10-07 11:29:42 [OA INFO ] 89006 -- --> 76 retreived sequences
2015-10-07 11:29:42 [OA INFO ] 89006 -- Done
2015-10-07 11:29:42 [OA INFO ] 89006 -- Building SSC coorientation graph...
2015-10-07 11:29:42 [OA INFO ] 89336 -- Build temporary blast DB...
2015-10-07 11:29:42 [OA INFO ] 89336 -- Done
2015-10-07 11:29:42 [OA INFO ] 89336 -- Running Blast...
2015-10-07 11:30:03 [OA INFO ] 89336 -- Done
2015-10-07 11:30:03 [OA INFO ] 89006 -- --> 1 connected componants
2015-10-07 11:30:03 [OA INFO ] 89006 -- Done
2015-10-07 11:30:03 [OA INFO ] 89006 -- Indexing SSC...
2015-10-07 11:30:03 [OA INFO ] 89006 -- Done
2015-10-07 11:30:03 [OA INFO ] 89006 -- Extracting main connected components for SSC...
2015-10-07 11:30:03 [OA INFO ] 89006 -- --> 72 sequences
2015-10-07 11:30:03 [OA INFO ] 89006 -- Done
2015-10-07 11:30:03 [OA INFO ] 89006 -- Extracting second connected components for SSC...
2015-10-07 11:30:03 [OA INFO ] 89006 -- --> 0 sequences
2015-10-07 11:30:03 [OA INFO ] 89006 -- Done
2015-10-07 11:30:03 [OA INFO ] 89006 -- merging both connected components for SSC...
2015-10-07 11:30:03 [OA INFO ] 89006 -- --> 72 sequences in total
2015-10-07 11:30:03 [OA INFO ] 89006 -- Done
2015-10-07 11:30:03 [OA INFO ] 89006 -- Checking SSC homogeneity...
2015-10-07 11:30:03 [OA INFO ] 89497 -- Build temporary blast DB...
2015-10-07 11:30:03 [OA INFO ] 89497 -- Done
2015-10-07 11:30:03 [OA INFO ] 89497 -- Running Blast...
2015-10-07 11:30:23 [OA INFO ] 89497 -- Done
2015-10-07 11:30:23 [OA INFO ] 89006 -- --> 1 connected componants
2015-10-07 11:30:23 [OA INFO ] 89006 -- Done
2015-10-07 11:30:23 [OA INFO ] 89006 -- Installing SSC reference databases...
2015-10-07 11:30:23 [OA INFO ] 89006 -- Done
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