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ORG.Asm
ORG.Annotate
Commits
0ecdb8d9
Commit
0ecdb8d9
authored
Jan 27, 2016
by
Eric Coissac
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Add the cd-hit program to the binaries
parent
0ea287f1
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5
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5 changed files
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89 additions
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1 deletion
+89
-1
.gitignore
.gitignore
+1
-0
src/Makefile
src/Makefile
+2
-1
src/cd-hit/Makefile
src/cd-hit/Makefile
+26
-0
src/cd-hit/cd-hit-v4.6.4-2015-0603.tgz
src/cd-hit/cd-hit-v4.6.4-2015-0603.tgz
+0
-0
src/muscle/muscle3.8.31/muscle.make.stderr.txt
src/muscle/muscle3.8.31/muscle.make.stderr.txt
+60
-0
No files found.
.gitignore
0 → 100644
View file @
0ecdb8d9
/test/
src/Makefile
View file @
0ecdb8d9
...
...
@@ -30,7 +30,8 @@ DIRS = aragorn \
sumaclust
\
sumatra
\
gawk
\
getopt
getopt
\
cd-hit
include
../config/targets/propagate.targ
...
...
src/cd-hit/Makefile
0 → 100644
View file @
0ecdb8d9
# ---------------------------------------------------------------
# $Id: $
# ---------------------------------------------------------------
# @file: Makefile
# @desc: makefile for package exonerate
#
# @history:
# @+ <Gloup> : Sept 15 : Adapted to ORG.Annot
#
# @note: should be processed with gnu compatible make
# @note: helixware_compatible
#
# @end:
# ---------------------------------------------------------------
#
include
../../config/auto.conf
PKG
=
cd-hit-v4.6.4-2015-0603
MAKEOPTIONS
=
openmp
=
no
PREFIX
=
$(PRTPATH)
/bin
include
$(CFGDIR)targets/package.targ
include
$(CFGDIR)targets/help.targ
src/cd-hit/cd-hit-v4.6.4-2015-0603.tgz
0 → 100644
View file @
0ecdb8d9
File added
src/muscle/muscle3.8.31/muscle.make.stderr.txt
View file @
0ecdb8d9
alpha.cpp:84:10: warning: enumeration value 'ALPHA_Undefined' not handled in switch [-Wswitch]
switch (Alpha)
^
1 warning generated.
clust.cpp:167:10: warning: enumeration value 'JOIN_Undefined' not handled in switch [-Wswitch]
switch (m_JoinStyle)
^
clust.cpp:295:10: warning: enumeration value 'LINKAGE_Undefined' not handled in switch [-Wswitch]
switch (m_CentroidStyle)
^
clust.cpp:611:10: warning: enumeration value 'JOIN_Undefined' not handled in switch [-Wswitch]
switch (m_JoinStyle)
^
3 warnings generated.
glbalndimer.cpp:123:10: warning: enumeration values 'PPSCORE_Undefined' and 'PPSCORE_SPN' not handled in switch [-Wswitch]
switch (g_PPScore)
^
1 warning generated.
msa2.cpp:357:10: warning: enumeration value 'SEQWEIGHT_Undefined' not handled in switch [-Wswitch]
switch (Method)
^
1 warning generated.
objscore.cpp:31:10: warning: enumeration values 'OBJSCORE_Undefined' and 'OBJSCORE_SPM' not handled in switch [-Wswitch]
switch (OS)
^
1 warning generated.
objscore2.cpp:22:10: warning: enumeration value 'TERMGAPS_Undefined' not handled in switch [-Wswitch]
switch (g_TermGaps)
^
1 warning generated.
params.cpp:441:10: warning: enumeration value 'PPSCORE_Undefined' not handled in switch [-Wswitch]
switch (g_PPScore)
^
1 warning generated.
In file included from profdb.cpp:9:
In file included from ./clustsetmsa.h:8:
./msadist.h:22:10: warning: 10 enumeration values not handled in switch: 'DISTANCE_Undefined', 'DISTANCE_Kmer6_6', 'DISTANCE_Kmer20_3'... [-Wswitch]
switch(m_Distance)
^
1 warning generated.
profilefrommsa.cpp:230:10: warning: enumeration value 'ALPHA_Undefined' not handled in switch [-Wswitch]
switch (g_Alpha)
^
1 warning generated.
In file included from refine.cpp:9:
In file included from ./clustsetmsa.h:8:
./msadist.h:22:10: warning: 10 enumeration values not handled in switch: 'DISTANCE_Undefined', 'DISTANCE_Kmer6_6', 'DISTANCE_Kmer20_3'... [-Wswitch]
switch(m_Distance)
^
1 warning generated.
subfams.cpp:44:25: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare]
for (unsigned i = 0; i < uNodeCount; ++i)
~ ^ ~~~~~~~~~~
1 warning generated.
In file included from treefrommsa.cpp:5:
In file included from ./clustsetmsa.h:8:
./msadist.h:22:10: warning: 10 enumeration values not handled in switch: 'DISTANCE_Undefined', 'DISTANCE_Kmer6_6', 'DISTANCE_Kmer20_3'... [-Wswitch]
switch(m_Distance)
^
1 warning generated.
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