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ORG.Asm
ORG.Annotate
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9be1f2c2
Commit
9be1f2c2
authored
Nov 13, 2015
by
Alain Viari
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cds test on core and shell
parent
f73133dc
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detectors/cds/test/test.db/core/Annot.lst
detectors/cds/test/test.db/core/Annot.lst
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detectors/cds/test/test.db/shell/Annot.lst
detectors/cds/test/test.db/shell/Annot.lst
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detectors/cds/test/test.db/shell/ycf1.fst
detectors/cds/test/test.db/shell/ycf1.fst
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detectors/cds/test/test.db/shell/ycf1.fst.phr
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detectors/cds/test/test.db/shell/ycf2.fst
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detectors/cds/test/test.db/core/Annot.lst
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@@ -14,5 +14,3 @@ rpl23 rpl23 787 1:782_2:2_3:1_4:2 POLYEX ribosomal_protein_L23
rpl32 rpl32 474 1:474 MONEX ribosomal_protein_L32
rps15 rps15 480 1:479_2:1 POLYEX ribosomal_protein_S15
rps7 rps7 853 1:853 MONEX ribosomal_protein_S7
ycf1 ycf1 408 1:406_2:2 POLYEX hypothetical_chloroplast_RF1
ycf2 ycf2 654 1:649_2:5 POLYEX Ycf2
detectors/cds/test/test.db/shell/Annot.lst
0 → 100644
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9be1f2c2
ycf1 ycf1 408 1:406_2:2 POLYEX hypothetical_chloroplast_RF1
ycf2 ycf2 654 1:649_2:5 POLYEX Ycf2
detectors/cds/test/test.db/
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/ycf1.fst
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detectors/cds/test/test.db/
shell
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detectors/cds/test/test.db/
shell
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detectors/cds/test/test.ref
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@@ -278,7 +278,7 @@ FT /gene="ycf1"
FT /locus_tag=""
FT /product="hypothetical chloroplast RF1"
FT /inference="similar to DNA sequence:AC_000188:LyesCp019"
FT /inference="detect pass:pass1:
core
"
FT /inference="detect pass:pass1:
shell
"
FT /translation="MIFQSFLLGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLL
FT RALVMEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYLLFHFFW
FT NNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYLFRCNNK
...
...
@@ -322,7 +322,7 @@ FT /gene="ycf2"
FT /locus_tag=""
FT /product="Ycf2"
FT /inference="similar to DNA sequence:AC_000188:LyesCp004"
FT /inference="detect pass:pass1:
core
"
FT /inference="detect pass:pass1:
shell
"
FT /translation="MRGHQFKSWIFELREILREIKNSHHFLDSWTQFNSVGSFIHIFFH
FT QERFLKLFDPRIWSILLSRNSQGSPSNRYFTIKGVILFVVAVLIYRINNRNMVERKNLY
FT LIGLLPIPMNSIGPRNDTLEESVGSSNINRLIVSLLYLPKGKKISESCFLNPKESTWVL
...
...
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