Commit 35e27b66 authored by Eric Coissac's avatar Eric Coissac

Patch a bug leading to a double pseudogene tagging

parent 318327af
...@@ -181,12 +181,15 @@ function Unk(s) { ...@@ -181,12 +181,15 @@ function Unk(s) {
QQualifier("product", Product) QQualifier("product", Product)
QQualifier("inference", "similar to DNA sequence:" Simil) QQualifier("inference", "similar to DNA sequence:" Simil)
QQualifier("inference", "org.annot -- detect pass:" PassType ":" PassInfo) QQualifier("inference", "org.annot -- detect pass:" PassType ":" PassInfo)
if (FrameShift==0) {
if (match(Translat,/\*/)>0) { if (match(Translat,/\*/)>0) {
QQualifier("pseudogene","unknown") QQualifier("pseudogene","unknown")
QQualifier("note","nonfunctional due to stop codon") QQualifier("note","nonfunctional due to stop codon")
} }
if (FrameShift==0)
QQualifier("translation", Translat) QQualifier("translation", Translat)
}
if (Nexon > 1) { if (Nexon > 1) {
for (i = 1 ; i <= Nexon ; i++) { for (i = 1 ; i <= Nexon ; i++) {
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment