Commit 0669e643 authored by Eric Coissac's avatar Eric Coissac

enforce the annotation of full-length rrna genes only

parent 865e2626
...@@ -44,11 +44,12 @@ pushTmpDir ORG.rrna ...@@ -44,11 +44,12 @@ pushTmpDir ORG.rrna
{loc=$5".."$6} \ {loc=$5".."$6} \
($1 ~ /_RC$/) { \ ($1 ~ /_RC$/) { \
loc="complement("loc")"} \ loc="complement("loc")"} \
{match($1,"_..*S");\ (full==1) {match($1,"_..*S");\
rrna=substr($1,RSTART+1,RLENGTH-1);\ rrna=substr($1,RSTART+1,RLENGTH-1);\
print "FT rRNA " loc; \ print "FT rRNA " loc; \
print "FT /gene=\"rrn"rrna"\"" print "FT /gene=\"rrn"rrna"\""
print "FT /product=\""rrna" ribosomal RNA\""\ print "FT /product=\""rrna" ribosomal RNA\"";\
full=0
}' }'
popTmpDir popTmpDir
......
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