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v3.0.1b7
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alinpairedend
: fixed bug that would cut out sequence ends when it should not have
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v3.0.1b6
- Now handling large int values (
import
rewrites column in OBI_FLOAT if a value is > INT32_MAX) - Fixed a bug where some taxids could not be retrieved
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import
/export
: fixed issue where the '\t' separator option was not read properly -
stats
: improved the tabular display to be properly read by R
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- Now handling large int values (
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v3.0.1b5
new command:
obi rm
: deletes any view (for now the user deleting a view accepts that there will be missing information when running obi history if other views descend from the deleted view)- Source code
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v3.0.1b4 - `ngsfilter`: fixed critical bug where barcodes shorter than the forward primer would be missed - `import`: fixed the import of tabular files with no header
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ngsfilter
: fixed critical bug where barcodes shorter than the forward primer would be missed -
import
: fixed the import of tabular files with no header
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v3.0.1b3 `uniq`: now OK to use -m option even if only one unique key in information to merge (e.g. one sample)
uniq
: now OK to use -m option even if only one unique key in information to merge (e.g. one sample)- Source code
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v3.0.1b1
The OBITools3 now work on the Windows Subsystem for Linux
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v3.0.0b42
import
: improved Genbank file parser- Source code
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v3.0.0b41
obi less
: fixed an issue when trying to display 'tabular data' such as ngsfilter files- Source code
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v3.0.0b40
Fixed compilation issue with latest versions of gcc
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v3.0.0b39
export
: fixed a bug where exporting to tab format with a header would not export the first line of data- Source code
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v3.0.0b37
import
: can now import SILVA fasta files, and now handling sequences with Uracil (U) nucleotides (by converting them to Thymine (T) for now)addtaxids
: new command to annotate sequences with their NCBI taxid based on their taxon name- Source code
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v3.0.0b36
obi ls
: reworked a bit (mostly just now done in C instead of Cython)- Source code
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v3.0.0b35
ecotag
: added separate threshold for minimum circle identity (sequence is assigned to the LCA of all sequences within a similarity circle of the best matches; the threshold for this circle is the highest value between the chosen minimum circle identity and the best assignment score found)- Source code
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v3.0.0b34
obi cat
: fixed open file descriptor leak- Source code
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v3.0.0b33
obi cat
: fixed a bug introduced in 3.0.0b28 (KeyError: 'noprogressbar'
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v3.0.0b32
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export
: now automatically sorts dictionary keys alphabetically for tab/csv output - various small bug fixes and improvements
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v3.0.0b31
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export
: fixed a bug introduced in versionv3.0.0b28
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ls
: added more information about view creation date and OBITools3 version
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