import EMBL database into DMS stalling
I'm running into some issues when trying to import the EMBL database into a DMS and was wondering if you could help. I've ran through the tutorial with the wolf data without any problem. However, when I try to make my own reference database using the code provided, the obi import command stalls after a while. It does not provide any error messages unfortunately.
The code I used to download the EMBL database and import the database into the DMS:
mkdir EMBL cd EMBL wget -nH --cut-dirs=5 -A rel_std_*.dat.gz -R rel_std_hum_*.dat.gz,rel_std_env_*.dat.gz -m ftp://ftp.ebi.ac.uk/pub/databases/embl/release/std/ cd .. obi import --embl EMBL wolf/embl_refs
I have also tried to run the obi import command in the following fashion:
obi import --embl EMBL/ wolf/embl_refs
I've reran the code several times and it stalls at different places when importing the various files, indicating the files are not corrupted, but that rather something is happening with the code. I've attached a screenshot of the output.
Thanks in advance, Gert-Jan