Commits · wsl_version · OBITools / OBITools3

11 Mar, 2021 3 commits
- obi test: fixed bug introduced in ad1fd3c3 · 8f1d94fd
  Celine Mercier authored Mar 11, 2021
  
  8f1d94fd
- C: Made maximum file path length 2048 instead of 1024 · 38f42cb0
  MercierC authored Mar 11, 2021
  
  38f42cb0
- C: now completely unmapping files before truncating them to a smaller · 7f0f63cf
  MercierC authored Mar 11, 2021
```
size (#68)
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  7f0f63cf
10 Mar, 2021 2 commits
- Switch to version 3.0.0b43 · 41fbae7b
  Celine Mercier authored Mar 10, 2021
  
  41fbae7b
- Now handling dictionaries with one key · ad1fd3c3
  Celine Mercier authored Mar 10, 2021
  
  ad1fd3c3
17 Feb, 2021 1 commit
- import: improved genbank parser and switch to version 3.0.0b42 · fbf0f7df
  Celine Mercier authored Feb 17, 2021
  
  fbf0f7df
10 Feb, 2021 3 commits
- Switch to version 3.0.0b41 · fda0edd0
  Celine Mercier authored Feb 10, 2021
  
  fda0edd0
- Fixes #88 · 382e37a6
  Celine Mercier authored Feb 10, 2021
  
  382e37a6
- obi test: made less heavy by default · 5cc3e29f
  Celine Mercier authored Feb 10, 2021
  
  5cc3e29f
06 Feb, 2021 1 commit
- Switch to version 3.0.0b40 · a8e2aee2
  Celine Mercier authored Feb 06, 2021
  
  a8e2aee2
05 Feb, 2021 1 commit
- Adds an extern qualifier to the keep_running declaration. · 13adb479
  Eric Coissac authored Feb 05, 2021
  
  13adb479
13 Jan, 2021 2 commits
- export: fixed a bug where exporting to tab format with a header would · 8ba7acdf
  Celine Mercier authored Jan 13, 2021
```
not export the first line of data and switch to version 3.0.0b39
```
  8ba7acdf
- Removed spurious commentaries · 38051b1e
  Celine Mercier authored Jan 13, 2021
  
  38051b1e
06 Nov, 2020 1 commit
- grep: fixed `--id-list` option · 52a2e21b
  Celine Mercier authored Nov 06, 2020
```
and switch to version 3.0.0b38
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  52a2e21b
30 Oct, 2020 6 commits
- Switch to version 3.0.0b37 · d27a5b91
  Celine Mercier authored Oct 30, 2020
  
  d27a5b91
- New command: obi addtaxids to add NCBI taxids to sequences from their · 20bd3350
  Celine Mercier authored Oct 30, 2020
```
taxon name.
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  20bd3350
- Now handling sequences with Uracil (U) nucleotides by converting to · 2e191372
  Celine Mercier authored Oct 30, 2020
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Thymine (T)
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  2e191372
- Taxonomy: new functions to find taxa by name · 112e12ca
  Celine Mercier authored Oct 30, 2020
  
  112e12ca
- import: now can import SILVA fasta files · b9b4cec5
  Celine Mercier authored Oct 30, 2020
  
  b9b4cec5
- Small fixes (potential compilation problems) · 199f3772
  Celine Mercier authored Oct 30, 2020
  
  199f3772
29 Sep, 2020 2 commits
- ecotag: clarified similarity circle documentation · 422a6450
  Celine Mercier authored Sep 29, 2020
  
  422a6450
- obi ls: now done in C (preparing things for R packages to read DMS) and · 137c109f
  Celine Mercier authored Sep 29, 2020
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switch to version 3.0.0b36
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  137c109f
25 Sep, 2020 3 commits
- Revert "Fixed version numbering mistake (should be b34 not b35)" · b6648ae8
  Celine Mercier authored Sep 25, 2020
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This reverts commit f6dffbec
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  b6648ae8
- Fixed version numbering mistake (should be b34 not b35) · f6dffbec
  Celine Mercier authored Sep 25, 2020
  
  f6dffbec
- ecotag: added separate threshold for minimum circle identity (and switch · c4696ac8
  Celine Mercier authored Sep 25, 2020
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to version 3.0.0b35
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  c4696ac8
28 Aug, 2020 1 commit
- obi cat: fixed open file descriptor leak and switch to version 3.0.0b34 · 11a0945a
  Celine Mercier authored Aug 28, 2020
  
  11a0945a
27 Aug, 2020 1 commit
- obi cat: fixed a bug introduced in 3.0.0b28 and switch to version · f23c40c9
  Celine Mercier authored Aug 27, 2020
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3.0.0b33
```
  f23c40c9
13 Aug, 2020 1 commit
- switch to version 3.0.0b32 · f99fc13b
  Celine Mercier authored Aug 13, 2020
  
  f99fc13b
12 Aug, 2020 1 commit
- C: patch for failed creation of AVL with errno EEXIST · 1da6aac1
  Celine Mercier authored Aug 12, 2020
  
  1da6aac1
31 Jul, 2020 1 commit
- export: now automatically sorts dictionary keys alphabetically for · 159803b4
  Celine Mercier authored Jul 31, 2020
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tab/csv output
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  159803b4
30 Jul, 2020 2 commits
- import: fixed entry count estimation when importing fastq files · 7dcbc340
  Celine Mercier authored Jul 30, 2020
  
  7dcbc340
- uniq: added a check to make sure that there is more than one element for · db2202c8
  Celine Mercier authored Jul 30, 2020
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one tag when merging its information
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  db2202c8
28 Jul, 2020 2 commits
- switch to version 3.0.0b31 · d33ff978
  Celine Mercier authored Jul 28, 2020
  
  d33ff978
- export: fixed a bug introduced in version 3.0.0b28 · 1dcdf69f
  Celine Mercier authored Jul 28, 2020
  
  1dcdf69f
27 Jul, 2020 3 commits
- Python: added "date created" information in view representation · dec114ee
  Celine Mercier authored Jul 27, 2020
  
  dec114ee
- Python: added the OBITools3 version that generated the view in view · f3669105
  Celine Mercier authored Jul 27, 2020
```
comments
```
  f3669105
- alignpairedend: fixed division by 0 bug and switch to version 3.0.0b30 · f2aa5fcf
  Celine Mercier authored Jul 27, 2020
  
  f2aa5fcf
26 Jul, 2020 3 commits
- switch to version 3.0.0b29 · bccb3e68
  Celine Mercier authored Jul 26, 2020
  
  bccb3e68
- C: added a missing error check · f5a17bea
  Celine Mercier authored Jul 26, 2020
  
  f5a17bea
- C and Cython: fixed and improved the associated columns system · e2850763
  Celine Mercier authored Jul 26, 2020
  
  e2850763