Commits · master · OBITools / OBITools3 · GitLab

29 May, 2020 1 commit
- obi import: fixed a bug when skipping an entry · 2a2c2339
  Celine Mercier committed May 29, 2020
  
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28 May, 2020 3 commits
- Switch to version 3.0.0b21 · faf8ea9d
  Celine Mercier committed May 28, 2020
  
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- Genbank parser: now reading ORIGIN lines with comments without · ffe2485e
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triggering error
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  Celine Mercier committed May 28, 2020
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- obi import: skip on error more robust · 6094ce2b
  Celine Mercier committed May 28, 2020
  
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20 May, 2020 4 commits
- Minor changes for pip release · a7dcf16c
  Celine Mercier committed May 20, 2020
  
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- obi import: minor doc/display improvements · f13f8f61
  Celine Mercier committed May 20, 2020
  
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- Switch to version 3.0.0b19 · b5a29ac4
  Celine Mercier committed May 20, 2020
  
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- obi import: fixed to work with `seq` genbank extension · ca6e3e7a
  Celine Mercier committed May 20, 2020
  
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18 May, 2020 2 commits
- Switch to version 3.0.0b18 with version formatting that fits setuptools · 76ed8e18
  Celine Mercier committed May 18, 2020
  
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- obi import: small bug fix · fa834e4b
  Celine Mercier committed May 18, 2020
  
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12 May, 2020 1 commit
- Python: fasta parser: fixed a bug stopping the program when the last · a72fea3c
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line contained a single nucleotide
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  Celine Mercier committed May 12, 2020
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07 May, 2020 5 commits
- Switch to version 3.0.0-beta16 · e9a37d8a
  Celine Mercier committed May 07, 2020
  
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- typo · ef074f84
  Celine Mercier committed May 07, 2020
  
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- Views: added obi prefix to commands in bash history · 170ef3f1
  Celine Mercier committed May 07, 2020
  
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- obi uniq: fixed the remerging of already merged informations, and · f9999465
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efficiency improvements
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  Celine Mercier committed May 07, 2020
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- obi import: fixed the import of old obitools files with premerged · 773b36ec
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informations, and other minor improvements
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  Celine Mercier committed May 07, 2020
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29 Apr, 2020 4 commits
- version 3.0.0-beta15c · 69cb434a
  Celine Mercier committed Apr 29, 2020
  
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- obi annotate: fixed annotation at ranks · 55d4f98d
  Celine Mercier committed Apr 29, 2020
  
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- ecotag: fixed a bug where all the full DMS path weren't properly sent to · 0bec2631
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the C layer
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  Celine Mercier committed Apr 29, 2020
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- AVLs: Made an error message more informative · e6b6c6fa
  Celine Mercier committed Apr 29, 2020
  
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28 Apr, 2020 2 commits
- build_ref_db: fixed bug erasing some of the higher LCAs (i.e. lowest · 974528b2
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similarities)
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  Celine Mercier committed Apr 28, 2020
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- ecotag: better specificity by now correctly looking for similarities · 1b346b54
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within refs above best score instead of ecotag threshold
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  Celine Mercier committed Apr 28, 2020
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27 Apr, 2020 1 commit
- ecopcr: fixed a bug where sequences were considered circular (generating · 058f2ad8
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false positives)
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  Celine Mercier committed Apr 27, 2020
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24 Apr, 2020 1 commit
- obi annotate: now defaults to setting str if expression is not valid · 60bfd3ae
  Celine Mercier committed Apr 24, 2020
  
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18 Apr, 2020 1 commit
- C: Columns: optimizing column file growth · 0f745e01
  Celine Mercier committed Apr 18, 2020
  
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17 Apr, 2020 2 commits
- export: fixed progress bar bug · da8de52b
  cmercier committed Apr 17, 2020
  
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- C: SSE lcs alignment: band-aid for memory bug I don't understand · 4d36538c
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(triggered on specific db on ubuntu)
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  cmercier committed Apr 17, 2020
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15 Apr, 2020 1 commit
- Switch to version 3.0.0-beta14 · 8d0b17d8
  Celine Mercier committed Apr 15, 2020
  
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13 Apr, 2020 1 commit
- C: Columns: reduced column growth factor from 2 to 1.3 to avoid errno28 · 8dbcd302
  Celine Mercier committed Apr 13, 2020
  
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12 Apr, 2020 5 commits
- Switch to version 3.0.0-beta13 · 4cf635d0
  Celine Mercier committed Apr 12, 2020
  
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- obi import: fixed inconsequential error when precomputing number of · ddea5a29
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entries in some formats
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  Celine Mercier committed Apr 12, 2020
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- View bash history: removed useless shebang · 30852ab7
  Celine Mercier committed Apr 12, 2020
  
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- all commands (almost): cleaner DMS closing at the end · 4d029990
  Celine Mercier committed Apr 12, 2020
  
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- obi stats: fixed error when printing bool keys · eef5156d
  Celine Mercier committed Apr 12, 2020
  
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09 Apr, 2020 2 commits
- obi import: fixed critical bug where the last entry of embl and genbank · cd9cea8c
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files was not imported
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  Celine Mercier committed Apr 09, 2020
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- ecopcr: made some errors more informative · 98cfb70d
  Celine Mercier committed Apr 09, 2020
  
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05 Apr, 2020 4 commits
- ecopcr: added warnings and check of primer length (related to #75 ) · b9f68c76
  Celine Mercier committed Apr 05, 2020
  
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- ngsfilter: added warning about primer length in -h (#75 ) · 0b983716
  Celine Mercier committed Apr 05, 2020
  
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- ngsfilter: now checking primer length (fixes #75 ) · f0d152fc
  Celine Mercier committed Apr 05, 2020
  
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- ecotag: now closing all DMS properly · 8019dee6
  Celine Mercier committed Apr 05, 2020
  
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