Commits · master · OBITools / OBITools3 · GitLab

25 Sep, 2020 3 commits
- Revert "Fixed version numbering mistake (should be b34 not b35)" · b6648ae8
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This reverts commit f6dffbec
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  Celine Mercier committed Sep 25, 2020
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- Fixed version numbering mistake (should be b34 not b35) · f6dffbec
  Celine Mercier committed Sep 25, 2020
  
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- ecotag: added separate threshold for minimum circle identity (and switch · c4696ac8
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to version 3.0.0b35
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  Celine Mercier committed Sep 25, 2020
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28 Aug, 2020 1 commit
- obi cat: fixed open file descriptor leak and switch to version 3.0.0b34 · 11a0945a
  Celine Mercier committed Aug 28, 2020
  
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27 Aug, 2020 1 commit
- obi cat: fixed a bug introduced in 3.0.0b28 and switch to version · f23c40c9
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3.0.0b33
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  Celine Mercier committed Aug 27, 2020
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13 Aug, 2020 1 commit
- switch to version 3.0.0b32 · f99fc13b
  Celine Mercier committed Aug 13, 2020
  
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12 Aug, 2020 1 commit
- C: patch for failed creation of AVL with errno EEXIST · 1da6aac1
  Celine Mercier committed Aug 12, 2020
  
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31 Jul, 2020 1 commit
- export: now automatically sorts dictionary keys alphabetically for · 159803b4
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tab/csv output
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  Celine Mercier committed Jul 31, 2020
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30 Jul, 2020 2 commits
- import: fixed entry count estimation when importing fastq files · 7dcbc340
  Celine Mercier committed Jul 30, 2020
  
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- uniq: added a check to make sure that there is more than one element for · db2202c8
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one tag when merging its information
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  Celine Mercier committed Jul 30, 2020
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28 Jul, 2020 2 commits
- switch to version 3.0.0b31 · d33ff978
  Celine Mercier committed Jul 28, 2020
  
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- export: fixed a bug introduced in version 3.0.0b28 · 1dcdf69f
  Celine Mercier committed Jul 28, 2020
  
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27 Jul, 2020 3 commits
- Python: added "date created" information in view representation · dec114ee
  Celine Mercier committed Jul 27, 2020
  
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- Python: added the OBITools3 version that generated the view in view · f3669105
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comments
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  Celine Mercier committed Jul 27, 2020
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- alignpairedend: fixed division by 0 bug and switch to version 3.0.0b30 · f2aa5fcf
  Celine Mercier committed Jul 27, 2020
  
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26 Jul, 2020 5 commits
- switch to version 3.0.0b29 · bccb3e68
  Celine Mercier committed Jul 26, 2020
  
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- C: added a missing error check · f5a17bea
  Celine Mercier committed Jul 26, 2020
  
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- C and Cython: fixed and improved the associated columns system · e2850763
  Celine Mercier committed Jul 26, 2020
  
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- obi test: made less heavy to be faster · e6feac93
  Celine Mercier committed Jul 26, 2020
  
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- obi import: added --space-priority option to import a view line by line · 50b292b4
  Celine Mercier committed Jul 26, 2020
  
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24 Jul, 2020 4 commits
- switch to version 3.0.0b28 · 24a737aa
  Celine Mercier committed Jul 24, 2020
  
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- Python: made all commands handle output to buffer object (e.g. stdout) · 8aa455ad
  Celine Mercier committed Jul 24, 2020
  
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- Cython: View: new method to print a view to a buffer (e.g. stdout) · 46ca693c
  Celine Mercier committed Jul 24, 2020
  
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- Cython: progress bar: set default refresh rate to 5 seconds · 9a9afde1
  Celine Mercier committed Jul 24, 2020
  
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13 Jul, 2020 3 commits
- grep: now prints the number of entries grepped · 8dd403a1
  Celine Mercier committed Jul 13, 2020
  
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- alignpairedend: improved/fixed the output tags for the alignment score · 9672f01c
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and lengths. Removed minimum score option
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  Celine Mercier committed Jul 13, 2020
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- ngsfilter: unidentified sequences are now stored untrimmed · ed9549ac
  Celine Mercier committed Jul 13, 2020
  
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07 Jul, 2020 2 commits
- Switch to version 3.0.0b27 · 9ace9989
  Celine Mercier committed Jul 07, 2020
  
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- C: AVL trees: fixed a bug where storing the difference between 2 crc64 · a3ebe5f1
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values in an int64 would mess trees up resulting in failed data
dereplication
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  Celine Mercier committed Jul 07, 2020
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03 Jul, 2020 1 commit
- obi uniq: quick fix for bug where some sequences are not correctly · 9100e148
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dereplicated
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  Celine Mercier committed Jul 03, 2020
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01 Jul, 2020 2 commits
- small help documentation improvement · ccda0661
  Celine Mercier committed Jul 01, 2020
  
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- obi clean: fixed a memory bug, fixed the behaviour when no sample info, · aab59f22
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and added checks warnings and error handling when sample info not
dereplicated
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  Celine Mercier committed Jul 01, 2020
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17 Jun, 2020 5 commits
- switch to version 3.0.0b26 · ade1107b
  Celine Mercier committed Jun 17, 2020
  
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- export: dictionaries are now formatted like in the original OBITools · 9c7d2440
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when exporting in tabular format and tuple formatting is cleaner
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  Celine Mercier committed Jun 17, 2020
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- Cython: utils: added handling of tuples to bytes2str_object function · 03bc9915
  Celine Mercier committed Jun 17, 2020
  
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- Cython: Columns: added a keys() method that returns all element names · 24b1dab5
  Celine Mercier committed Jun 17, 2020
  
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- ngsfilter: now setting 'reversed' tag to False instead of None when · 7593673f
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false
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  Celine Mercier committed Jun 17, 2020
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13 Jun, 2020 3 commits
- switch to version 3.0.0b25 · aa01236c
  Celine Mercier committed Jun 13, 2020
  
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- C: made indexer opening/closing cleaner · 49b8810a
  Celine Mercier committed Jun 13, 2020
  
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- ls: fixed an issue where big DMS couldn't be read by ls · 7a39df54
  Celine Mercier committed Jun 13, 2020
  
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