Commits · master · OBITools / OBITools3 · GitLab

12 Feb, 2020 3 commits
- Swich to version 3.0.0-beta11 · 0b4a2346
  Celine Mercier committed Feb 12, 2020
  
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- ecotag: fixed the generated column comments formatting that would · d32cfdcc
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generate errors
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  Celine Mercier committed Feb 12, 2020
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- obi cat: Fixed the handling when concatenating views with dictionaries · 219c0d6f
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having different key sets
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  Celine Mercier committed Feb 12, 2020
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02 Feb, 2020 3 commits
- switch to version 3.0.0-beta10 · dc9f8979
  Celine Mercier committed Feb 02, 2020
  
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- obi import: new option --preread to do a first readthrough of the · bb72682f
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dataset if it contains huge dictionaries for a much faster import.
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  Celine Mercier committed Feb 02, 2020
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- URI decoding: dirty temp fix for bug where default dms makes a mess when · 52920c3c
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should guess file
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  Celine Mercier committed Feb 02, 2020
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01 Feb, 2020 2 commits
- switch to version 3.0.0-beta9 · 18c22cec
  Celine Mercier committed Feb 01, 2020
  
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- obi import: rewriting a column now deletes the old one to save disk · 1bfb9602
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space
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  Celine Mercier committed Feb 01, 2020
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29 Jan, 2020 2 commits
- obi import: fixed a bug when the first entry would contain a dictionary · c67d6689
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with one key. Switch to beta8
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  Celine Mercier committed Jan 29, 2020
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- switch to version 3.0.0-beta7 · db0ac37d
  Celine Mercier committed Jan 29, 2020
  
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24 Jan, 2020 1 commit
- Removed an OpenMP clause that was not obligatory and triggered a known · d0c21ecd
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gcc bug involving macros
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  Celine Mercier committed Jan 24, 2020
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23 Jan, 2020 1 commit
- History: added 'obi' in bash history for practical reasons · 53212168
  Celine Mercier committed Jan 23, 2020
  
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18 Jan, 2020 5 commits
- Cleaner handling of reverse quality columns · b4b2e621
  Celine Mercier committed Jan 18, 2020
  
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- Switching to version 3.0-beta6 · ced82c42
  Celine Mercier committed Jan 18, 2020
  
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- New command: obi cat to concatenate views (not optimized yet) · a524f882
  Celine Mercier committed Jan 18, 2020
  
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- C: closing DMS after cleaning it instead of counting on upper layer · 5c9091e9
  Celine Mercier committed Jan 18, 2020
  
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- Fixes in documentation · 822000cb
  Celine Mercier committed Jan 18, 2020
  
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06 Jan, 2020 2 commits
- C: Changed obibool definitions because of conflict with R · b9cd9bee
  Celine Mercier committed Jan 06, 2020
  
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- ngsfilter: fixed a bug when there is only one tag introduced in latest · b1f3e082
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edit
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  Celine Mercier committed Jan 06, 2020
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26 Dec, 2019 1 commit
- ecopcr: fixed and improved the options to keep nuclotides around the · 6c018b40
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amplicon
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  Celine Mercier committed Dec 26, 2019
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12 Dec, 2019 4 commits
- Tagging version beta3 · 694d1934
  Celine Mercier committed Dec 12, 2019
  
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- clean_dms: now works with extension · fc3ac036
  Celine Mercier committed Dec 12, 2019
  
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- uniq: added forced deletion of reverse sequence quality · d75e54a0
  Celine Mercier committed Dec 12, 2019
  
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- ngsfilter: fixed sequence cutting when dealing with unaligned sequences. · 6bfd7441
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Could use optimization
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  Celine Mercier committed Dec 12, 2019
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10 Dec, 2019 2 commits
- ngsfilter: fixed sequence cut bug on aligned sequences. Still exists for · 81a17923
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unaligned sequences
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  Celine Mercier committed Dec 10, 2019
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- ngsfilter: fixed a bug with unaligned chimeras (unpaired primers) and · 35ce37c0
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made error annotations more explicit
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  Celine Mercier committed Dec 10, 2019
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29 Nov, 2019 1 commit
- ngsfilter: made more robust and practical to use with empty tags · 53f18316
  Celine Mercier committed Nov 29, 2019
  
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27 Sep, 2019 1 commit
- Version 3.0.0-beta1 · 8bc249b2
  Celine Mercier committed Sep 27, 2019
  
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26 Sep, 2019 2 commits
- versioning 1.0.beta · e308c2e8
  Celine Mercier committed Sep 26, 2019
  
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- CMake: unset gcc for nix · 3b3cf935
  Celine Mercier committed Sep 26, 2019
  
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25 Sep, 2019 5 commits
- Python: URIs: fixed bug on linux systems · be85c55c
  Celine Mercier committed Sep 25, 2019
  
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- Cleaning · 6d5b9048
  Celine Mercier committed Sep 25, 2019
  
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- Added website URL in readme file · 50e8374f
  Celine Mercier committed Sep 25, 2019
  
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- C: Views: fixed a bug when trying to add a comment after changing the · 6282242a
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file name of a finished view
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  Celine Mercier committed Sep 25, 2019
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- Fixed gcc warnings · 44517db5
  Celine Mercier committed Sep 25, 2019
  
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24 Sep, 2019 1 commit
- more cleaning · c3b9e462
  Celine Mercier committed Sep 24, 2019
  
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22 Sep, 2019 4 commits
- Cython API: simpler column repr display · 28b7fce5
  Celine Mercier committed Sep 22, 2019
  
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- obi stats: fixed bug with None values · fa9555de
  Celine Mercier committed Sep 22, 2019
  
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- more cleaning · d30f7e73
  Celine Mercier committed Sep 22, 2019
  
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- cleaning · 4fa38d98
  Celine Mercier committed Sep 22, 2019
  
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