Commits · master · OBITools / OBITools3 · GitLab

18 Jan, 2020 5 commits
- Cleaner handling of reverse quality columns · b4b2e621
  Celine Mercier committed Jan 18, 2020
  
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- Switching to version 3.0-beta6 · ced82c42
  Celine Mercier committed Jan 18, 2020
  
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- New command: obi cat to concatenate views (not optimized yet) · a524f882
  Celine Mercier committed Jan 18, 2020
  
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- C: closing DMS after cleaning it instead of counting on upper layer · 5c9091e9
  Celine Mercier committed Jan 18, 2020
  
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- Fixes in documentation · 822000cb
  Celine Mercier committed Jan 18, 2020
  
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06 Jan, 2020 2 commits
- C: Changed obibool definitions because of conflict with R · b9cd9bee
  Celine Mercier committed Jan 06, 2020
  
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- ngsfilter: fixed a bug when there is only one tag introduced in latest · b1f3e082
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edit
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  Celine Mercier committed Jan 06, 2020
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26 Dec, 2019 1 commit
- ecopcr: fixed and improved the options to keep nuclotides around the · 6c018b40
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amplicon
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  Celine Mercier committed Dec 26, 2019
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12 Dec, 2019 4 commits
- Tagging version beta3 · 694d1934
  Celine Mercier committed Dec 12, 2019
  
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- clean_dms: now works with extension · fc3ac036
  Celine Mercier committed Dec 12, 2019
  
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- uniq: added forced deletion of reverse sequence quality · d75e54a0
  Celine Mercier committed Dec 12, 2019
  
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- ngsfilter: fixed sequence cutting when dealing with unaligned sequences. · 6bfd7441
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Could use optimization
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  Celine Mercier committed Dec 12, 2019
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10 Dec, 2019 2 commits
- ngsfilter: fixed sequence cut bug on aligned sequences. Still exists for · 81a17923
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unaligned sequences
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  Celine Mercier committed Dec 10, 2019
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- ngsfilter: fixed a bug with unaligned chimeras (unpaired primers) and · 35ce37c0
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made error annotations more explicit
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  Celine Mercier committed Dec 10, 2019
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29 Nov, 2019 1 commit
- ngsfilter: made more robust and practical to use with empty tags · 53f18316
  Celine Mercier committed Nov 29, 2019
  
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27 Sep, 2019 1 commit
- Version 3.0.0-beta1 · 8bc249b2
  Celine Mercier committed Sep 27, 2019
  
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26 Sep, 2019 2 commits
- versioning 1.0.beta · e308c2e8
  Celine Mercier committed Sep 26, 2019
  
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- CMake: unset gcc for nix · 3b3cf935
  Celine Mercier committed Sep 26, 2019
  
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25 Sep, 2019 5 commits
- Python: URIs: fixed bug on linux systems · be85c55c
  Celine Mercier committed Sep 25, 2019
  
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- Cleaning · 6d5b9048
  Celine Mercier committed Sep 25, 2019
  
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- Added website URL in readme file · 50e8374f
  Celine Mercier committed Sep 25, 2019
  
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- C: Views: fixed a bug when trying to add a comment after changing the · 6282242a
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file name of a finished view
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  Celine Mercier committed Sep 25, 2019
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- Fixed gcc warnings · 44517db5
  Celine Mercier committed Sep 25, 2019
  
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24 Sep, 2019 1 commit
- more cleaning · c3b9e462
  Celine Mercier committed Sep 24, 2019
  
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22 Sep, 2019 6 commits
- Cython API: simpler column repr display · 28b7fce5
  Celine Mercier committed Sep 22, 2019
  
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- obi stats: fixed bug with None values · fa9555de
  Celine Mercier committed Sep 22, 2019
  
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- more cleaning · d30f7e73
  Celine Mercier committed Sep 22, 2019
  
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- cleaning · 4fa38d98
  Celine Mercier committed Sep 22, 2019
  
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- obi import: fixed bug when importing a taxdump · 71276537
  Celine Mercier committed Sep 22, 2019
  
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- obi grep: now able to convert str to bytes in predicate expressions · ba9ba7aa
  Celine Mercier committed Sep 22, 2019
  
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21 Sep, 2019 8 commits
- Bash completion script for commands, dms and views · 7b4046c2
  Celine Mercier committed Sep 21, 2019
  
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- Cleaned setup script and put to my name ;) · e2ba7600
  Celine Mercier committed Sep 21, 2019
  
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- obi less: now actually behaves like less · 336100f7
  Celine Mercier committed Sep 21, 2019
  
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- Cython: View: lines from simple View instances are now displayed in tab · d83398c0
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instead of dict format
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  Celine Mercier committed Sep 21, 2019
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- Cython: Fixed bug in tab formatter with header option always being set · 974d25b8
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to true
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  Celine Mercier committed Sep 21, 2019
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- Added signal catching and handling in C and Cython · ec0737a6
  Celine Mercier committed Sep 21, 2019
  
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- obi import: importing a view to a DMS now uses the C API (more efficient · 06f9d6da
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and imports all metadata)
```
  Celine Mercier committed Sep 21, 2019
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- Python API: small option improvements · f0f7edf1
  Celine Mercier committed Sep 21, 2019
  
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20 Sep, 2019 2 commits
- obi ls: improved taxonomy list · 9e72c8d1
  Celine Mercier committed Sep 20, 2019
  
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- obi import: fixed bug when reading output URI · 7c3fa147
  Celine Mercier committed Sep 20, 2019
  
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