Commits · master · OBITools / OBITools3 · GitLab

06 Jul, 2019 4 commits
- C: ecotag: fixed 2 memory bugs · 17593028
  Celine Mercier committed Jul 06, 2019
  
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- C: kmer similarity: small improvements · 86bfa96f
  Celine Mercier committed Jul 06, 2019
  
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- obi alignpairedend: fixed a bug where first seq was kept in result view · f765c6f4
```
instead of consensus seq
```
  Celine Mercier committed Jul 06, 2019
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- obi stats: result display is now sorted · a83bf43a
  Celine Mercier committed Jul 06, 2019
  
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20 Jun, 2019 1 commit
- obiclean parallelized · 3d9f0352
  Celine Mercier committed Jun 20, 2019
  
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19 Jun, 2019 1 commit
- multithreaded obiclean working but not cleaned · 9b4c3537
  Celine Mercier committed Jun 19, 2019
  
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04 Jun, 2019 1 commit
- j loop with critical (untested) · fd0b7a91
  Celine Mercier committed Jun 04, 2019
  
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25 May, 2019 1 commit
- i loop parallelized: bad · debf59b2
  Celine Mercier committed May 25, 2019
  
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24 May, 2019 1 commit
- openmp on j loop (i loop probably better) · a04588da
  Celine Mercier committed May 24, 2019
  
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22 May, 2019 1 commit
- CMake: setting compiler higher to avoid conflicts, and linking libopenmp · ed5bb70c
  Celine Mercier committed May 22, 2019
  
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19 May, 2019 1 commit
- obi clean: not using tsearch library anymore, a simple byte array · 22a5ae72
```
instead. A lot more time and memory efficient. Closes #67
```
  Celine Mercier committed May 19, 2019
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12 Apr, 2019 2 commits
- Add a --cobitools3 options to setup.py · dc88181e
  Eric Coissac committed Apr 12, 2019
  
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- Comment the install of the packages · 2f60e91d
  Eric Coissac committed Apr 12, 2019
  
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01 Apr, 2019 3 commits
- Ask for python 3.7 · 7ba27b6a
  Eric Coissac committed Apr 01, 2019
  
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- Add the cmakefile to the manifest · d3937e10
  Eric Coissac committed Apr 01, 2019
  
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- Build the C src in build/cobject · 35eeb07f
  Eric Coissac committed Apr 01, 2019
  
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31 Mar, 2019 11 commits
- CMake: made required version 3.10 for ubuntu · 3afbbeb7
  Celine Mercier committed Mar 31, 2019
  
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- dirty temporary fix for install · d6056a8e
  Celine Mercier committed Mar 31, 2019
  
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- history: fixed DMS history when multiple inputs · ac47bdce
  Celine Mercier committed Mar 31, 2019
  
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- C: obi lcs: cleaner progress print · 7f8d1e71
  Celine Mercier committed Mar 31, 2019
  
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- ngsfilter: fixed parsing error · 80068a3c
  Celine Mercier committed Mar 31, 2019
  
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- obi import: fixed import of View_NUC_SEQS to another DMS · a3e6b7d9
  Celine Mercier committed Mar 31, 2019
  
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- Cython: made fasta formatter cleaner · 416c2d7b
  Celine Mercier committed Mar 31, 2019
  
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- C: made build_ref_db cleaner · 26fb149e
  Celine Mercier committed Mar 31, 2019
  
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- Cython: added possibility to output in tabular format · 2b8c066f
  Celine Mercier committed Mar 31, 2019
  
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- Cython: added tab formatter and parser (for obi export) · e39c1a7f
  Celine Mercier committed Mar 31, 2019
  
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- obi history: fixed a bug when displaying ascii history · 6841d879
  Celine Mercier committed Mar 31, 2019
  
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30 Mar, 2019 10 commits
- Removing trace · f0ff5854
  Celine Mercier committed Mar 30, 2019
  
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- obi uniq: various fixes... · 601a2cfd
  Celine Mercier committed Mar 30, 2019
  
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- C: Views: fixed a bug when creating automatic columns with unformatted · 7c518300
```
comments
```
  Celine Mercier committed Mar 30, 2019
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- obi grep: fixed a bug where -p option didn't work · f16bbca8
  Celine Mercier committed Mar 30, 2019
  
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- Merge commit '3d842ff7' · 17348344
  Celine Mercier committed Mar 30, 2019
  
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- C: taxonomy: fixed a segfault on linux when trying to fclose an unopened · 52b3a9fc
```
file
```
  Celine Mercier committed Mar 30, 2019
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- obi import: progress bar fixed when using --only option · ce686e95
  Celine Mercier committed Mar 30, 2019
  
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- Python: embl parser: fixed a bug preventing taxids from being parsed · c293cfab
  Celine Mercier committed Mar 30, 2019
  
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- fixed typo · 0847d618
  Celine Mercier committed Mar 30, 2019
  
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- C: build_reference_db: made some errors more explicit · 9fcebd76
  Celine Mercier committed Mar 30, 2019
  
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29 Mar, 2019 3 commits
- Clean the manifest of old files · 5d842ff7
  Eric Coissac committed Mar 29, 2019
  
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- remove all the no more needed .cfiles · 34455792
  Eric Coissac committed Mar 29, 2019
  
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- Add the new script emplacement · 995a66b4
  Eric Coissac committed Mar 29, 2019
  
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