Commits · master · OBITools / OBITools3 · GitLab

06 Apr, 2021 3 commits
- switch to version 3.0.1b7 · 72b3e5d8
  MercierC committed Apr 07, 2021
  
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- alignpairedend: fixed bug that would cut out sequence ends when it · 238e9f70
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should not have
```
  MercierC committed Apr 07, 2021
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- small fixes · e099a166
  MercierC committed Apr 07, 2021
  
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29 Mar, 2021 3 commits
- import: fixed count estimation for tabular files with header · 847c9c81
  MercierC committed Mar 30, 2021
  
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- Fixes 101 · 6026129c
  MercierC committed Mar 30, 2021
  
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- small doc fixes · 169b6514
  MercierC committed Mar 29, 2021
  
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28 Mar, 2021 5 commits
- switch to version 3.0.1b6 · 89b0c481
  MercierC committed Mar 29, 2021
  
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- import/export: workaround for issue where flake8(?) reads '\t' as · 7c02782e
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'\'+'t' when parsing an option value
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  MercierC committed Mar 29, 2021
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- stats: improved the tabular display · ecc4c2c7
  MercierC committed Mar 29, 2021
  
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- C: taxonomy: fixed a bug where some taxa would not be stored in the · f5413381
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merged index
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  MercierC committed Mar 29, 2021
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- import: Columns are now rewritten in OBI_FLOAT if a value is > INT32_MAX · 3e93cfff
  MercierC committed Mar 29, 2021
  
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21 Mar, 2021 1 commit
- switch to version 3.0.1b5 · 6d445fe3
  MercierC committed Mar 22, 2021
  
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17 Mar, 2021 1 commit
- new command: obi rm: deletes any view (for now the user deleting a view · 824deb7e
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accepts that there will be missing information when running obi history
if other views came from the deleted view)
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  MercierC committed Mar 18, 2021
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16 Mar, 2021 2 commits
- switch to version 3.0.1b4 · d579bb27
  MercierC committed Mar 16, 2021
  
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- ngsfilter: fixed critical bug where barcodes shorter than the forward · 10e5ebdb
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primer would be missed
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  MercierC committed Mar 16, 2021
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15 Mar, 2021 5 commits
- import: fixed the import of tabular files with no header · 88331104
  MercierC committed Mar 16, 2021
  
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- switch to version 3.0.1b3 · bd38449f
  MercierC committed Mar 15, 2021
  
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- uniq: now OK to use -m option even if only one unique key in information · 904823c8
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to merge (e.g. one sample)
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  MercierC committed Mar 15, 2021
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- Switch to version 3.0.1b2 · af68a102
  MercierC committed Mar 15, 2021
  
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- Made the OBITools3 more 'empty file friendly' · 425fe25b
  MercierC committed Mar 15, 2021
  
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11 Mar, 2021 5 commits
- switch to version 3.0.1b1 · d48aed38
  Celine Mercier committed Mar 11, 2021
  
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- Merge branch 'wsl_version' · 5e32f852
  Celine Mercier committed Mar 11, 2021
  
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- obi test: fixed bug introduced in ad1fd3c3 · 8f1d94fd
  Celine Mercier committed Mar 11, 2021
  
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- C: Made maximum file path length 2048 instead of 1024 · 38f42cb0
  MercierC committed Mar 11, 2021
  
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- C: now completely unmapping files before truncating them to a smaller · 7f0f63cf
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size (#68)
```
  MercierC committed Mar 11, 2021
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10 Mar, 2021 3 commits
- obi test: fixed bug introduced in previous version · cba78111
  Celine Mercier committed Mar 11, 2021
  
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- Switch to version 3.0.0b43 · 41fbae7b
  Celine Mercier committed Mar 10, 2021
  
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- Now handling dictionaries with one key · ad1fd3c3
  Celine Mercier committed Mar 10, 2021
  
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17 Feb, 2021 1 commit
- import: improved genbank parser and switch to version 3.0.0b42 · fbf0f7df
  Celine Mercier committed Feb 17, 2021
  
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10 Feb, 2021 3 commits
- Switch to version 3.0.0b41 · fda0edd0
  Celine Mercier committed Feb 10, 2021
  
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- Fixes #88 · 382e37a6
  Celine Mercier committed Feb 10, 2021
  
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- obi test: made less heavy by default · 5cc3e29f
  Celine Mercier committed Feb 10, 2021
  
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06 Feb, 2021 1 commit
- Switch to version 3.0.0b40 · a8e2aee2
  Celine Mercier committed Feb 06, 2021
  
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05 Feb, 2021 1 commit
- Adds an extern qualifier to the keep_running declaration. · 13adb479
  Eric Coissac committed Feb 05, 2021
  
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13 Jan, 2021 2 commits
- export: fixed a bug where exporting to tab format with a header would · 8ba7acdf
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not export the first line of data and switch to version 3.0.0b39
```
  Celine Mercier committed Jan 13, 2021
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- Removed spurious commentaries · 38051b1e
  Celine Mercier committed Jan 13, 2021
  
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06 Nov, 2020 1 commit
- grep: fixed `--id-list` option · 52a2e21b
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and switch to version 3.0.0b38
```
  Celine Mercier committed Nov 06, 2020
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30 Oct, 2020 3 commits
- Switch to version 3.0.0b37 · d27a5b91
  Celine Mercier committed Oct 30, 2020
  
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- New command: obi addtaxids to add NCBI taxids to sequences from their · 20bd3350
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taxon name.
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  Celine Mercier committed Oct 30, 2020
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- Now handling sequences with Uracil (U) nucleotides by converting to · 2e191372
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Thymine (T)
```
  Celine Mercier committed Oct 30, 2020
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