Commits · master · OBITools / OBITools3 · GitLab

27 Sep, 2019 1 commit
- Version 3.0.0-beta1 · 8bc249b2
  Celine Mercier committed Sep 27, 2019
  
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26 Sep, 2019 2 commits
- versioning 1.0.beta · e308c2e8
  Celine Mercier committed Sep 26, 2019
  
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- CMake: unset gcc for nix · 3b3cf935
  Celine Mercier committed Sep 26, 2019
  
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25 Sep, 2019 5 commits
- Python: URIs: fixed bug on linux systems · be85c55c
  Celine Mercier committed Sep 25, 2019
  
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- Cleaning · 6d5b9048
  Celine Mercier committed Sep 25, 2019
  
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- Added website URL in readme file · 50e8374f
  Celine Mercier committed Sep 25, 2019
  
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- C: Views: fixed a bug when trying to add a comment after changing the · 6282242a
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file name of a finished view
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  Celine Mercier committed Sep 25, 2019
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- Fixed gcc warnings · 44517db5
  Celine Mercier committed Sep 25, 2019
  
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24 Sep, 2019 1 commit
- more cleaning · c3b9e462
  Celine Mercier committed Sep 24, 2019
  
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22 Sep, 2019 6 commits
- Cython API: simpler column repr display · 28b7fce5
  Celine Mercier committed Sep 22, 2019
  
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- obi stats: fixed bug with None values · fa9555de
  Celine Mercier committed Sep 22, 2019
  
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- more cleaning · d30f7e73
  Celine Mercier committed Sep 22, 2019
  
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- cleaning · 4fa38d98
  Celine Mercier committed Sep 22, 2019
  
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- obi import: fixed bug when importing a taxdump · 71276537
  Celine Mercier committed Sep 22, 2019
  
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- obi grep: now able to convert str to bytes in predicate expressions · ba9ba7aa
  Celine Mercier committed Sep 22, 2019
  
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21 Sep, 2019 8 commits
- Bash completion script for commands, dms and views · 7b4046c2
  Celine Mercier committed Sep 21, 2019
  
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- Cleaned setup script and put to my name ;) · e2ba7600
  Celine Mercier committed Sep 21, 2019
  
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- obi less: now actually behaves like less · 336100f7
  Celine Mercier committed Sep 21, 2019
  
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- Cython: View: lines from simple View instances are now displayed in tab · d83398c0
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instead of dict format
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  Celine Mercier committed Sep 21, 2019
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- Cython: Fixed bug in tab formatter with header option always being set · 974d25b8
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to true
```
  Celine Mercier committed Sep 21, 2019
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- Added signal catching and handling in C and Cython · ec0737a6
  Celine Mercier committed Sep 21, 2019
  
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- obi import: importing a view to a DMS now uses the C API (more efficient · 06f9d6da
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and imports all metadata)
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  Celine Mercier committed Sep 21, 2019
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- Python API: small option improvements · f0f7edf1
  Celine Mercier committed Sep 21, 2019
  
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20 Sep, 2019 4 commits
- obi ls: improved taxonomy list · 9e72c8d1
  Celine Mercier committed Sep 20, 2019
  
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- obi import: fixed bug when reading output URI · 7c3fa147
  Celine Mercier committed Sep 20, 2019
  
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- new command: clean_dms to clean and unlock a DMS after a bad exit. · ec874c09
  Celine Mercier committed Sep 20, 2019
  
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- DMS are now locked when used by a command. Added checks and changed · 783a1343
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cleaning mechanisms.
```
  Celine Mercier committed Sep 20, 2019
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17 Sep, 2019 7 commits
- obi import: proper check for taxonomy name already existing in DMS when · eb6c59dc
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importing a taxdump
```
  Celine Mercier committed Sep 17, 2019
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- obi export: if export format is not specified, it is guessed from the · ad460561
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view type
```
  Celine Mercier committed Sep 17, 2019
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- Export options: output option is now only non-positional for obi export · 9063e915
  Celine Mercier committed Sep 17, 2019
  
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- URI decoding: fixed bug with dms-only URI · 01593859
  Celine Mercier committed Sep 17, 2019
  
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- obi export: made output to stdout and pipe in less possible · a0c8deb8
  Celine Mercier committed Sep 17, 2019
  
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- Added option for no progress bar and made output URI option non · f566618b
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positional (for stdout output)
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  Celine Mercier committed Sep 17, 2019
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- URIs: added stdout output (empty URI) · 88451116
  Celine Mercier committed Sep 17, 2019
  
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15 Sep, 2019 1 commit
- ecotag: trying to use a threshold lower than the ref db threshold now · eb913b27
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returns an error instead of a warning
```
  Celine Mercier committed Sep 15, 2019
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10 Sep, 2019 4 commits
- obi stats: improved display with str instead of bytes · f8d1fa67
  Celine Mercier committed Sep 10, 2019
  
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- obi clean: fixed an openmp bug where the share size would be 0 blocking · bc55c5ef
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the program
```
  Celine Mercier committed Sep 10, 2019
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- fixed a comment · f3b0e10c
  Celine Mercier committed Sep 10, 2019
  
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- obi ls: various improvements · 8f9f2a2d
  Celine Mercier committed Sep 10, 2019
  
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05 Sep, 2019 1 commit
- Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools3.git · 045a751b
  Celine Mercier committed Sep 05, 2019
  
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