Commits · bc55c5ef8c87f289d3bebe06cb67c3e09aebc2f1 · OBITools / OBITools3 · GitLab

10 Sep, 2019 3 commits
- obi clean: fixed an openmp bug where the share size would be 0 blocking · bc55c5ef
```
the program
```
  Celine Mercier committed Sep 10, 2019
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- fixed a comment · f3b0e10c
  Celine Mercier committed Sep 10, 2019
  
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- obi ls: various improvements · 8f9f2a2d
  Celine Mercier committed Sep 10, 2019
  
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05 Sep, 2019 2 commits
- Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools3.git · 045a751b
  Celine Mercier committed Sep 05, 2019
  
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- Little fixes for linux compilation · ad3a7259
  Celine Mercier committed Sep 05, 2019
  
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04 Sep, 2019 6 commits
- Update README.md · 88994782
  Celine Mercier committed Sep 04, 2019
  
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- Update README.md · ec614e5d
  Celine Mercier committed Sep 04, 2019
  
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- Update README.md · f8cccebe
  Celine Mercier committed Sep 04, 2019
  
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- C: Fixed opened DIR leak · 5e3c41b0
  Celine Mercier committed Sep 04, 2019
  
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- C: fixed a bug when opening or creating a new column directory where the · b3a1011d
```
DMS was not saved in the struct
```
  Celine Mercier committed Sep 04, 2019
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- C: made it so column DIR* are not kept open to handle very large DMS · a7fabff1
  Celine Mercier committed Sep 04, 2019
  
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03 Sep, 2019 1 commit
- Various display improvements · f2965177
  Celine Mercier committed Sep 03, 2019
  
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01 Sep, 2019 1 commit
- C: fixed remaining memory bug in array indexer · d491480a
  Celine Mercier committed Sep 01, 2019
  
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31 Aug, 2019 3 commits
- C: ecotag: now prints a warning if the demanded threshold is lower than · 073d98db
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the db threshold
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  Celine Mercier committed Aug 31, 2019
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- C: build_ref_db: now adds a comment with the threshold used to build the · 0ee728c4
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DB
```
  Celine Mercier committed Aug 31, 2019
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- C: Json comments: added an obi_read_comment function to read one value · 7423baca
```
from comments
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  Celine Mercier committed Aug 31, 2019
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29 Aug, 2019 7 commits
- Fixed log to be in str instead of bytes · 53dcbc8e
  Celine Mercier committed Aug 29, 2019
  
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- obi import: fixed entry count · 4e75514b
  Celine Mercier committed Aug 29, 2019
  
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- obi grep: made an error message clearer (error could be eventually be · 1ed2d45a
```
handled by program, looking for str in bytes returned by a column)
```
  Celine Mercier committed Aug 29, 2019
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- C: optimized dir opening · e43e49d6
  Celine Mercier committed Aug 29, 2019
  
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- Better detection of missing taxonomy · 18705302
  Celine Mercier committed Aug 29, 2019
  
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- Improved obi stats · dcf8cf1d
  Celine Mercier committed Aug 29, 2019
  
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- Improved progress display when importing files in a DMS · 3cfe3a9b
  Celine Mercier committed Aug 29, 2019
  
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28 Aug, 2019 1 commit
- Python: better display of tuple values in fasta format · 728af51c
  Celine Mercier committed Aug 28, 2019
  
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27 Aug, 2019 5 commits
- obi uniq: various improvements and fixes #66 · 99a397b8
  Celine Mercier committed Aug 27, 2019
  
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- C: fixed a memory bug in the array indexer · f5c472ff
  Celine Mercier committed Aug 27, 2019
  
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- minor comment · 580db2f7
  Celine Mercier committed Aug 27, 2019
  
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- Increased the threshold of elements per line in a column before they are · dbe09f83
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stored as a character string
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  Celine Mercier committed Aug 27, 2019
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- Better handling of column lines with all values at NA · 3d1b2e8e
  Celine Mercier committed Aug 27, 2019
  
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19 Aug, 2019 1 commit
- fixes #61 : now reading merged taxids information when building a · ae5f42c2
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reference database
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  Celine Mercier committed Aug 19, 2019
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18 Aug, 2019 3 commits
- Fixed a bug where a directory was not closed properly resulting in errno · af7cecf5
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24 sometimes
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  Celine Mercier committed Aug 18, 2019
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- Minor fixes · 5f20be44
  Celine Mercier committed Aug 18, 2019
  
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- Fixed a bug when sending a DMS path to a C function from Cython · 66441e0a
  Celine Mercier committed Aug 18, 2019
  
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25 Jul, 2019 1 commit
- Fixed a bug where some commands wouldn't work if the input DMS was not · 13952358
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in the current directory
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  Celine Mercier committed Jul 25, 2019
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23 Jul, 2019 4 commits
- updated a comment · 9f38cd8c
  Celine Mercier committed Jul 23, 2019
  
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- ecotag: fixed a bug where the wrong taxid for the best match was · 946f9723
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retrieved
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  Celine Mercier committed Jul 23, 2019
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- embl parser: information display about progress when parsing multiple · 9752ff84
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files
```
  Celine Mercier committed Jul 23, 2019
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- ngsfilter and alignpairedend: paired-end reads are now correctly · d99702f5
```
reversed and labeled to be aligned correctly by alignpairedend
```
  Celine Mercier committed Jul 23, 2019
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06 Jul, 2019 2 commits
- C: ecotag: fixed 2 memory bugs · 17593028
  Celine Mercier committed Jul 06, 2019
  
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- C: kmer similarity: small improvements · 86bfa96f
  Celine Mercier committed Jul 06, 2019
  
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