Commits · ae5f42c2606c416682abb9b0020d2000678cd164 · OBITools / OBITools3 · GitLab

19 Aug, 2019 1 commit
- fixes #61 : now reading merged taxids information when building a · ae5f42c2
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reference database
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  Celine Mercier committed Aug 19, 2019
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18 Aug, 2019 3 commits
- Fixed a bug where a directory was not closed properly resulting in errno · af7cecf5
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24 sometimes
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  Celine Mercier committed Aug 18, 2019
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- Minor fixes · 5f20be44
  Celine Mercier committed Aug 18, 2019
  
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- Fixed a bug when sending a DMS path to a C function from Cython · 66441e0a
  Celine Mercier committed Aug 18, 2019
  
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25 Jul, 2019 1 commit
- Fixed a bug where some commands wouldn't work if the input DMS was not · 13952358
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in the current directory
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  Celine Mercier committed Jul 25, 2019
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23 Jul, 2019 4 commits
- updated a comment · 9f38cd8c
  Celine Mercier committed Jul 23, 2019
  
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- ecotag: fixed a bug where the wrong taxid for the best match was · 946f9723
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retrieved
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  Celine Mercier committed Jul 23, 2019
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- embl parser: information display about progress when parsing multiple · 9752ff84
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files
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  Celine Mercier committed Jul 23, 2019
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- ngsfilter and alignpairedend: paired-end reads are now correctly · d99702f5
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reversed and labeled to be aligned correctly by alignpairedend
```
  Celine Mercier committed Jul 23, 2019
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06 Jul, 2019 4 commits
- C: ecotag: fixed 2 memory bugs · 17593028
  Celine Mercier committed Jul 06, 2019
  
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- C: kmer similarity: small improvements · 86bfa96f
  Celine Mercier committed Jul 06, 2019
  
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- obi alignpairedend: fixed a bug where first seq was kept in result view · f765c6f4
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instead of consensus seq
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  Celine Mercier committed Jul 06, 2019
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- obi stats: result display is now sorted · a83bf43a
  Celine Mercier committed Jul 06, 2019
  
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20 Jun, 2019 1 commit
- obiclean parallelized · 3d9f0352
  Celine Mercier committed Jun 20, 2019
  
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19 Jun, 2019 1 commit
- multithreaded obiclean working but not cleaned · 9b4c3537
  Celine Mercier committed Jun 19, 2019
  
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04 Jun, 2019 1 commit
- j loop with critical (untested) · fd0b7a91
  Celine Mercier committed Jun 04, 2019
  
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25 May, 2019 1 commit
- i loop parallelized: bad · debf59b2
  Celine Mercier committed May 25, 2019
  
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24 May, 2019 1 commit
- openmp on j loop (i loop probably better) · a04588da
  Celine Mercier committed May 24, 2019
  
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22 May, 2019 1 commit
- CMake: setting compiler higher to avoid conflicts, and linking libopenmp · ed5bb70c
  Celine Mercier committed May 22, 2019
  
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19 May, 2019 1 commit
- obi clean: not using tsearch library anymore, a simple byte array · 22a5ae72
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instead. A lot more time and memory efficient. Closes #67
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  Celine Mercier committed May 19, 2019
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12 Apr, 2019 2 commits
- Add a --cobitools3 options to setup.py · dc88181e
  Eric Coissac committed Apr 12, 2019
  
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- Comment the install of the packages · 2f60e91d
  Eric Coissac committed Apr 12, 2019
  
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01 Apr, 2019 3 commits
- Ask for python 3.7 · 7ba27b6a
  Eric Coissac committed Apr 01, 2019
  
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- Add the cmakefile to the manifest · d3937e10
  Eric Coissac committed Apr 01, 2019
  
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- Build the C src in build/cobject · 35eeb07f
  Eric Coissac committed Apr 01, 2019
  
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31 Mar, 2019 11 commits
- CMake: made required version 3.10 for ubuntu · 3afbbeb7
  Celine Mercier committed Mar 31, 2019
  
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- dirty temporary fix for install · d6056a8e
  Celine Mercier committed Mar 31, 2019
  
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- history: fixed DMS history when multiple inputs · ac47bdce
  Celine Mercier committed Mar 31, 2019
  
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- C: obi lcs: cleaner progress print · 7f8d1e71
  Celine Mercier committed Mar 31, 2019
  
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- ngsfilter: fixed parsing error · 80068a3c
  Celine Mercier committed Mar 31, 2019
  
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- obi import: fixed import of View_NUC_SEQS to another DMS · a3e6b7d9
  Celine Mercier committed Mar 31, 2019
  
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- Cython: made fasta formatter cleaner · 416c2d7b
  Celine Mercier committed Mar 31, 2019
  
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- C: made build_ref_db cleaner · 26fb149e
  Celine Mercier committed Mar 31, 2019
  
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- Cython: added possibility to output in tabular format · 2b8c066f
  Celine Mercier committed Mar 31, 2019
  
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- Cython: added tab formatter and parser (for obi export) · e39c1a7f
  Celine Mercier committed Mar 31, 2019
  
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- obi history: fixed a bug when displaying ascii history · 6841d879
  Celine Mercier committed Mar 31, 2019
  
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30 Mar, 2019 4 commits
- Removing trace · f0ff5854
  Celine Mercier committed Mar 30, 2019
  
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- obi uniq: various fixes... · 601a2cfd
  Celine Mercier committed Mar 30, 2019
  
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- C: Views: fixed a bug when creating automatic columns with unformatted · 7c518300
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comments
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  Celine Mercier committed Mar 30, 2019
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- obi grep: fixed a bug where -p option didn't work · f16bbca8
  Celine Mercier committed Mar 30, 2019
  
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