Commits · 6bd42132c4d48192f71d589a81dee37dadfb7ff5 · OBITools / OBITools3

23 Mar, 2016 1 commit
- Minor fixes to silence warnings and replaced two asprintf uses · 6bd42132
  Celine Mercier authored Mar 23, 2016
  
  6bd42132
22 Mar, 2016 1 commit
- Merge branch 'multiple_avls_bloom' · 40859043
  Celine Mercier authored Mar 22, 2016
  
  40859043
21 Mar, 2016 1 commit
- made POSIX compliant · b04b4b59
  Celine Mercier authored Mar 21, 2016
  
  b04b4b59
18 Mar, 2016 2 commits
- Merge branch 'master' of git@git.metabarcoding.org:obitools/obitools3.git · 383e738a
  Celine Mercier authored Mar 18, 2016
  
  383e738a
- Multiple AVLs with bloom filters (very raw test version) · 3681cecb
  Celine Mercier authored Mar 18, 2016
  
  3681cecb
11 Mar, 2016 3 commits
- Code for tests storing data in multiple AVLs. · 545ed811
  Celine Mercier authored Mar 11, 2016
```
(note: unretrievable data as implemented)
```
  545ed811
- Minor improvement in AVL initial size calculation · 86071d30
  Celine Mercier authored Mar 11, 2016
  
  86071d30
- First implementation of taxonomy reading · 21d1b2ed
  Celine Mercier authored Mar 11, 2016
  
  21d1b2ed
08 Mar, 2016 1 commit
- prototype for the obi unix command and the count sub command · 61576331
  Eric Coissac authored Mar 08, 2016
  
  61576331
01 Mar, 2016 1 commit
- It is now impossible to create a view with a name identical to one of an · a08def47
  Celine Mercier authored Mar 01, 2016
```
existing written view
```
  a08def47
29 Feb, 2016 4 commits
- Closes #34 · fc5a12ba
  Celine Mercier authored Feb 29, 2016
  
  fc5a12ba
- Cython classes for nucleotide sequences (outside or in the context of a · e323d8e7
  Celine Mercier authored Feb 29, 2016
```
view)
```
  e323d8e7
- Fixed minor error · b350ea03
  Celine Mercier authored Feb 29, 2016
  
  b350ea03
- Increased the maximum depth of AVL trees · 8e9e21a0
  Celine Mercier authored Feb 29, 2016
  
  8e9e21a0
25 Feb, 2016 1 commit
- Added Obiviews specialized for the handling of nucleotide sequences · 4df313c5
  Celine Mercier authored Feb 25, 2016
  
  4df313c5
18 Feb, 2016 2 commits
- Deleted a forgotten print statement · ffc68d44
  Celine Mercier authored Feb 18, 2016
  
  ffc68d44
- Major update : views · a8f03248
  Celine Mercier authored Feb 18, 2016
  
  a8f03248
11 Dec, 2015 3 commits
- Fixed more typos and formatting imperfections. · cfaf0690
  Celine Mercier authored Dec 11, 2015
  
  cfaf0690
- Fixed typos · a6144eab
  Celine Mercier authored Dec 11, 2015
  
  a6144eab
- DNA sequences and character strings are now handled using AVL trees. · c1393675
  Celine Mercier authored Dec 11, 2015
  
  c1393675
02 Dec, 2015 1 commit

Added the lists of opened columns and arrays in the OBIDMS structure, · 1586956d

Celine Mercier authored Dec 02, 2015

and a counter in the OBIDMS column structure; fixed some bugs and
created tests for referring columns that are bound to disappear anyway.

1586956d

29 Nov, 2015 1 commit
- Major update: new type of columns containing indices referring to lines · b45b496b
  Celine Mercier authored Nov 29, 2015
```
in other columns
```
  b45b496b
23 Nov, 2015 4 commits
- Column type is now passed as a character string when creating the column · 2cf10cb6
  Celine Mercier authored Nov 23, 2015
```
(either 'OBI_INT', 'OBI_FLOAT', 'OBI_BOOL', 'OBI_CHAR', 'OBI_STR' or
'OBI_SEQ')
```
  2cf10cb6
- deleting useless .pyc files · 5a551630
  Celine Mercier authored Nov 23, 2015
  
  5a551630
- Fixed a major bug with the versioning of columns that was introduced in · d6a99baf
  Celine Mercier authored Nov 23, 2015
```
f6ec8ba9
```
  d6a99baf
- Increased maximum line count of columns to 1^9 · 08f2657e
  Celine Mercier authored Nov 23, 2015
  
  08f2657e
20 Nov, 2015 2 commits
- DNA sequences are now encoded on 4 bits when they are in IUPAC · 6aa2f929
  Celine Mercier authored Nov 20, 2015
  
  6aa2f929
- modified the encoding function on 2 bits a little · 87044b41
  Celine Mercier authored Nov 20, 2015
  
  87044b41
19 Nov, 2015 2 commits
- New column type for DNA sequences. Only for those coded on 2 bits (only · 6ab1c833
  Celine Mercier authored Nov 19, 2015
```
'ATGCatgc') for now.
```
  6ab1c833
- changed version to 0.0.0 · e3712485
  Celine Mercier authored Nov 19, 2015
  
  e3712485
18 Nov, 2015 1 commit
- The endianness of a DMS is now stored in the OBIDMS structure · dbf94632
  Celine Mercier authored Nov 18, 2015
  
  dbf94632
16 Nov, 2015 2 commits
- Fixed minor error in the documentation of a function. · eb12af4d
  Celine Mercier authored Nov 16, 2015
  
  eb12af4d
- The endianness of an OBIDMS is now stored in an informations file that · e8417b4f
  Celine Mercier authored Nov 16, 2015
```
is read when opening the OBIDMS.
```
  e8417b4f
10 Nov, 2015 6 commits
- Minor changes in code to improve readability and fix C compilation · 6579566c
  Celine Mercier authored Nov 10, 2015
```
warnings
```
  6579566c
- When retrieving the header of a column, the version number of the column · 410e2e02
  Celine Mercier authored Nov 10, 2015
```
wanted can now be provided.
```
  410e2e02
- When enlarging a column, the function doesn't try anymore to keep the · 8ce4f264
  Celine Mercier authored Nov 10, 2015
```
mapped region at the same pointer (never works), and unmap/remap
instead.
```
  8ce4f264
- The header size when creating a column is now calculated according to · d885eb48
  Celine Mercier authored Nov 10, 2015
```
the size of the header structure and the page size of the platform.
```
  d885eb48
- In OBI_CHAR columns, characters are now given and retrieved as decoded · 661fe360
  Celine Mercier authored Nov 10, 2015
```
(unicode) characters.
```
  661fe360
- Comments in column headers are now working. · c4b7e579
  Celine Mercier authored Nov 10, 2015
  
  c4b7e579
09 Nov, 2015 1 commit
- The header size is now directly read in the file when a column or an · f6ec8ba9
  Celine Mercier authored Nov 09, 2015
```
array is opened.
```
  f6ec8ba9