import: improved genbank parser and switch to version 3.0.0b42

python/obitools3/parsers/genbank.pyx

@@ -22,10 +22,10 @@ from libc.stdlib  cimport free, malloc, realloc
 from libc.string cimport strcpy, strlen
 
 
-_featureMatcher = re.compile(b'^FEATURES.+\n(?=ORIGIN)',re.DOTALL + re.M)
+_featureMatcher = re.compile(b'^FEATURES.+\n(?=ORIGIN )',re.DOTALL + re.M)
 
 _headerMatcher = re.compile(b'^LOCUS.+(?=\nFEATURES)', re.DOTALL + re.M)
-_seqMatcher    = re.compile(b'ORIGIN.+(?=//\n)', re.DOTALL + re.M)
+_seqMatcher    = re.compile(b'ORIGIN .+(?=//\n)', re.DOTALL + re.M)
 _cleanSeq1     = re.compile(b'ORIGIN.+\n')
 _cleanSeq2     = re.compile(b'[ \n0-9]+')
 _acMatcher     = re.compile(b'(?<=^ACCESSION   ).+',re.M)

python/obitools3/version.py

 major = 3
 minor = 0
-serial= '0b41'
+serial= '0b42'
 
 version ="%d.%d.%s" % (major,minor,serial)