Commit fbf0f7df by Celine Mercier

import: improved genbank parser and switch to version 3.0.0b42

parent fda0edd0
...@@ -22,10 +22,10 @@ from libc.stdlib cimport free, malloc, realloc ...@@ -22,10 +22,10 @@ from libc.stdlib cimport free, malloc, realloc
from libc.string cimport strcpy, strlen from libc.string cimport strcpy, strlen
_featureMatcher = re.compile(b'^FEATURES.+\n(?=ORIGIN)',re.DOTALL + re.M) _featureMatcher = re.compile(b'^FEATURES.+\n(?=ORIGIN )',re.DOTALL + re.M)
_headerMatcher = re.compile(b'^LOCUS.+(?=\nFEATURES)', re.DOTALL + re.M) _headerMatcher = re.compile(b'^LOCUS.+(?=\nFEATURES)', re.DOTALL + re.M)
_seqMatcher = re.compile(b'ORIGIN.+(?=//\n)', re.DOTALL + re.M) _seqMatcher = re.compile(b'ORIGIN .+(?=//\n)', re.DOTALL + re.M)
_cleanSeq1 = re.compile(b'ORIGIN.+\n') _cleanSeq1 = re.compile(b'ORIGIN.+\n')
_cleanSeq2 = re.compile(b'[ \n0-9]+') _cleanSeq2 = re.compile(b'[ \n0-9]+')
_acMatcher = re.compile(b'(?<=^ACCESSION ).+',re.M) _acMatcher = re.compile(b'(?<=^ACCESSION ).+',re.M)
......
major = 3 major = 3
minor = 0 minor = 0
serial= '0b41' serial= '0b42'
version ="%d.%d.%s" % (major,minor,serial) version ="%d.%d.%s" % (major,minor,serial)
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